Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CCKAR 226 89 29 13 0 0 0.876 0.345 0.112 0.050 0.000 0.000 chr4 26476396 26495484
CCKBR 212 72 40 28 0 0 0.822 0.279 0.155 0.109 0.000 0.000 chr11 6254838 6277127
CCK 214 73 39 29 1 1 0.829 0.283 0.151 0.112 0.004 0.004 chr3 42252826 42271185
CCL11 223 86 33 18 1 0 0.864 0.333 0.128 0.070 0.004 0.000 chr17 34280742 34293334
CCL13 222 84 35 20 0 0 0.860 0.326 0.136 0.078 0.000 0.000 chr17 34351480 34363610
CCL14 222 80 34 23 1 1 0.860 0.310 0.132 0.089 0.004 0.004 chr17 35978288 35991729
CCL15 220 79 36 25 0 0 0.853 0.306 0.140 0.097 0.000 0.000 chr17 35992582 36006553
CCL16 228 87 30 18 0 0 0.884 0.337 0.116 0.070 0.000 0.000 chr17 35971499 35986497
CCL17 193 64 55 35 0 0 0.748 0.248 0.213 0.136 0.000 0.000 chr16 57399767 57421063
CCL18 227 82 29 21 1 1 0.880 0.318 0.112 0.081 0.004 0.004 chr17 36059272 36077032
CCL19 199 59 56 44 1 0 0.771 0.229 0.217 0.171 0.004 0.000 chr9 34684570 34696276
CCL1 207 75 50 30 1 0 0.802 0.291 0.194 0.116 0.004 0.000 chr17 34355328 34368233
CCL20 223 76 32 27 2 1 0.864 0.295 0.124 0.105 0.008 0.004 chr2 227808842 227822556
CCL21 217 75 38 27 0 0 0.841 0.291 0.147 0.105 0.000 0.000 chr9 34704005 34715136
CCL22 217 80 40 25 1 0 0.841 0.310 0.155 0.097 0.004 0.000 chr16 57353783 57371189
CCL23 211 78 41 21 0 0 0.818 0.302 0.159 0.081 0.000 0.000 chr17 36008058 36022972
CCL24 202 72 49 29 1 0 0.783 0.279 0.190 0.112 0.004 0.000 chr7 75805825 75818806
CCL25 213 70 39 30 1 1 0.826 0.271 0.151 0.116 0.004 0.004 chr19 8047760 8067650
CCL26 211 78 44 25 0 0 0.818 0.302 0.171 0.097 0.000 0.000 chr7 75764538 75777211
CCL27 190 61 64 40 0 0 0.736 0.236 0.248 0.155 0.000 0.000 chr9 34656890 34667657
CCL28 162 51 86 51 0 0 0.628 0.198 0.333 0.198 0.000 0.000 chr5 43374193 43417391
CCL2 216 75 39 28 0 0 0.837 0.291 0.151 0.109 0.000 0.000 chr17 34250285 34262203
CCL3L3 79 29 27 8 151 68 0.306 0.112 0.105 0.031 0.585 0.264 chr17 36189869 36201758
CCL3 190 70 62 32 0 0 0.736 0.271 0.240 0.124 0.000 0.000 chr17 36083256 36095143
CCL4L2 78 29 26 6 152 69 0.302 0.112 0.101 0.023 0.589 0.267 chr17 36206063 36217873
CCL4 206 72 45 27 1 0 0.798 0.279 0.174 0.105 0.004 0.000 chr17 36098827 36110614
CCL5 187 63 68 39 0 0 0.725 0.244 0.264 0.151 0.000 0.000 chr17 35866491 35885360
CCL7 213 75 43 28 0 0 0.826 0.291 0.167 0.109 0.000 0.000 chr17 34265221 34277242
CCL8 211 81 43 22 0 0 0.818 0.314 0.167 0.085 0.000 0.000 chr17 34314435 34326402
CCM2L 149 30 103 70 0 0 0.578 0.116 0.399 0.271 0.000 0.000 chr20 32005438 32037180
CCM2 157 43 77 47 0 0 0.609 0.167 0.298 0.182 0.000 0.000 chr7 44995201 45081453
CCN1 232 88 25 16 0 0 0.899 0.341 0.097 0.062 0.000 0.000 chr1 85575761 85588950
CCN2 223 84 32 19 1 0 0.864 0.326 0.124 0.074 0.004 0.000 chr6 131943176 131956372
CCN3 175 59 80 44 0 0 0.678 0.229 0.310 0.171 0.000 0.000 chr8 119411446 119429434
CCN4 197 65 40 22 0 0 0.764 0.252 0.155 0.085 0.000 0.000 chr8 133186039 133236690
CCN5 222 79 33 23 1 1 0.860 0.306 0.128 0.089 0.004 0.004 chr20 44710369 44732811
CCN6 214 82 42 22 1 0 0.829 0.318 0.163 0.085 0.004 0.000 chr6 112049104 112074686
CCNA1 219 77 37 26 0 0 0.849 0.298 0.143 0.101 0.000 0.000 chr13 36427495 36447870
CCNA2 206 69 51 35 0 0 0.798 0.267 0.198 0.136 0.000 0.000 chr4 121811444 121828883
CCNB1IP1 208 74 46 28 0 0 0.806 0.287 0.178 0.109 0.000 0.000 chr14 20306370 20338279
CCNB1 209 75 44 26 0 0 0.810 0.291 0.171 0.101 0.000 0.000 chr5 69162150 69183245
CCNB2 193 62 60 38 0 0 0.748 0.240 0.233 0.147 0.000 0.000 chr15 59100146 59130045
CCNB3 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chrX 50199765 50356914
CCNC 204 77 49 24 0 0 0.791 0.298 0.190 0.093 0.000 0.000 chr6 99537387 99573660
CCND1 205 64 48 37 0 0 0.795 0.248 0.186 0.143 0.000 0.000 chr11 69636156 69659474
CCND2 229 84 20 15 0 0 0.888 0.326 0.078 0.058 0.000 0.000 chr12 4268762 4310353
CCND3 227 82 31 23 0 0 0.880 0.318 0.120 0.089 0.000 0.000 chr6 41929952 41946808
CCNDBP1 178 70 75 32 0 0 0.690 0.271 0.291 0.124 0.000 0.000 chr15 43180403 43202177
CCNE1 212 72 42 30 0 0 0.822 0.279 0.163 0.116 0.000 0.000 chr19 29806991 29829312
CCNE2 175 58 73 42 0 0 0.678 0.225 0.283 0.163 0.000 0.000 chr8 94875224 94900201