Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CCDC50 202 77 51 24 0 0 0.783 0.298 0.198 0.093 0.000 0.000 chr3 191324394 191403659
view CCDC51 192 63 64 40 0 0 0.744 0.244 0.248 0.155 0.000 0.000 chr3 48427173 48445119
view CCDC54 199 64 58 41 0 0 0.771 0.248 0.225 0.159 0.000 0.000 chr3 107372439 107383635
view CCDC57 125 21 98 64 0 0 0.484 0.081 0.380 0.248 0.000 0.000 chr17 82096470 82217842
view CCDC59 172 59 80 44 0 0 0.667 0.229 0.310 0.171 0.000 0.000 chr12 82347303 82363387
view CCDC60 127 27 69 44 0 0 0.492 0.105 0.267 0.171 0.000 0.000 chr12 119329729 119546040
view CCDC61 213 69 36 28 0 0 0.826 0.267 0.140 0.109 0.000 0.000 chr19 45990467 46023616
view CCDC62 148 41 84 47 0 0 0.574 0.159 0.326 0.182 0.000 0.000 chr12 122769572 122832528
view CCDC63 143 41 81 45 0 0 0.554 0.159 0.314 0.174 0.000 0.000 chr12 110841987 110912535
view CCDC65 187 58 66 42 0 0 0.725 0.225 0.256 0.163 0.000 0.000 chr12 48899133 48926576
view CCDC66 185 69 60 28 1 1 0.717 0.267 0.233 0.109 0.004 0.004 chr3 56552175 56626837
view CCDC68 162 47 78 47 0 0 0.628 0.182 0.302 0.182 0.000 0.000 chr18 54896509 54964461
view CCDC69 212 74 32 23 0 0 0.822 0.287 0.124 0.089 0.000 0.000 chr5 151176052 151229092
view CCDC6 143 38 90 54 0 0 0.554 0.147 0.349 0.209 0.000 0.000 chr10 59783747 59911556
view CCDC70 214 73 44 32 0 0 0.829 0.283 0.171 0.124 0.000 0.000 chr13 51856969 51871232
view CCDC71L 219 73 33 27 0 0 0.849 0.283 0.128 0.105 0.000 0.000 chr7 106649360 106666158
view CCDC71 120 25 136 79 1 0 0.465 0.097 0.527 0.306 0.004 0.000 chr3 49157535 49171331
view CCDC73 155 38 83 55 0 0 0.601 0.147 0.322 0.213 0.000 0.000 chr11 32597721 32799662
view CCDC74A 219 76 35 26 1 0 0.849 0.295 0.136 0.101 0.004 0.000 chr2 131522888 131538666
view CCDC74B 224 78 31 24 0 0 0.868 0.302 0.120 0.093 0.000 0.000 chr2 130134287 130150112
view CCDC77 215 82 30 14 0 0 0.833 0.318 0.116 0.054 0.000 0.000 chr12 396644 447642
view CCDC78 194 58 57 40 0 0 0.752 0.225 0.221 0.155 0.000 0.000 chr16 717582 731443
view CCDC7 183 64 65 35 0 0 0.709 0.248 0.252 0.136 0.000 0.000 chr10 32441140 32887864
view CCDC80 189 65 59 32 0 0 0.733 0.252 0.229 0.124 0.000 0.000 chr3 112591797 112646143
view CCDC81 201 74 49 25 0 0 0.779 0.287 0.190 0.097 0.000 0.000 chr11 86369887 86428106
view CCDC82 190 65 60 36 0 0 0.736 0.252 0.233 0.140 0.000 0.000 chr11 96347773 96394912
view CCDC83 166 57 75 36 0 0 0.643 0.221 0.291 0.140 0.000 0.000 chr11 85850383 85925013
view CCDC85A 153 50 63 33 0 0 0.593 0.194 0.244 0.128 0.000 0.000 chr2 56178990 56391172
view CCDC85B 213 75 42 28 0 0 0.826 0.291 0.163 0.109 0.000 0.000 chr11 65885673 65896635
view CCDC85C 149 38 69 43 0 0 0.578 0.147 0.267 0.167 0.000 0.000 chr14 99495190 99609207
view CCDC86 200 65 53 35 0 0 0.775 0.252 0.205 0.136 0.000 0.000 chr11 60837113 60856081
view CCDC87 192 73 62 28 0 0 0.744 0.283 0.240 0.109 0.000 0.000 chr11 66585176 66598063
view CCDC88A 157 62 75 32 0 0 0.609 0.240 0.291 0.124 0.000 0.000 chr2 55282842 55424856
view CCDC88B 199 60 55 41 0 0 0.771 0.233 0.213 0.159 0.000 0.000 chr11 64335204 64362534
view CCDC88C 141 31 62 44 0 0 0.547 0.120 0.240 0.171 0.000 0.000 chr14 91266323 91422820
view CCDC89 226 86 30 17 0 0 0.876 0.333 0.116 0.066 0.000 0.000 chr11 85678848 85691195
view CCDC8 227 78 28 24 0 0 0.880 0.302 0.109 0.093 0.000 0.000 chr19 46405329 46418564
view CCDC90B 206 76 46 24 1 1 0.798 0.295 0.178 0.093 0.004 0.004 chr11 83254081 83291367
view CCDC91 120 36 104 57 0 0 0.465 0.140 0.403 0.221 0.000 0.000 chr12 28185456 28555166
view CCDC92B 208 70 41 27 0 0 0.806 0.271 0.159 0.105 0.000 0.000 chr17 2715801 2754652
view CCDC92 124 23 117 70 0 0 0.481 0.089 0.453 0.271 0.000 0.000 chr12 123930626 123977831
view CCDC93 160 44 77 49 0 0 0.620 0.171 0.298 0.190 0.000 0.000 chr2 117910481 118019070
view CCDC96 215 73 40 29 0 0 0.833 0.283 0.155 0.112 0.000 0.000 chr4 7035849 7048001
view CCDC97 175 48 73 51 0 0 0.678 0.186 0.283 0.198 0.000 0.000 chr19 41305172 41329873
view CCDC9B 210 71 46 32 1 1 0.814 0.275 0.178 0.124 0.004 0.004 chr15 40326452 40345939
view CCDC9 200 65 47 32 0 0 0.775 0.252 0.182 0.124 0.000 0.000 chr19 47251525 47276953
view CCER1 202 74 54 30 1 0 0.783 0.287 0.209 0.116 0.004 0.000 chr12 90947215 90960176
view CCER2 224 81 32 23 2 1 0.868 0.314 0.124 0.089 0.008 0.004 chr19 38903980 38917186
view CCHCR1 227 82 29 21 0 0 0.880 0.318 0.112 0.081 0.000 0.000 chr6 31137439 31162802
view CCIN 212 74 41 27 0 0 0.822 0.287 0.159 0.105 0.000 0.000 chr9 36164388 36176334