Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CCDC166 211 69 40 29 0 0 0.818 0.267 0.155 0.112 0.000 0.000 chr8 143701694 143713109
CCDC167 198 70 55 31 0 0 0.767 0.271 0.213 0.120 0.000 0.000 chr6 37477938 37504893
CCDC168 179 64 68 35 0 0 0.694 0.248 0.264 0.136 0.000 0.000 chr13 102724367 102764072
CCDC169 181 60 60 33 0 0 0.702 0.233 0.233 0.128 0.000 0.000 chr13 36225775 36302814
CCDC170 159 52 69 38 0 0 0.616 0.202 0.267 0.147 0.000 0.000 chr6 151489017 151626193
CCDC171 132 41 81 48 0 0 0.512 0.159 0.314 0.186 0.000 0.000 chr9 15548043 15979037
CCDC172 168 60 69 34 0 0 0.651 0.233 0.267 0.132 0.000 0.000 chr10 116319448 116385029
CCDC174 215 78 41 25 0 0 0.833 0.302 0.159 0.097 0.000 0.000 chr3 14646762 14677655
CCDC175 146 36 95 60 0 0 0.566 0.140 0.368 0.233 0.000 0.000 chr14 59500067 59581812
CCDC177 168 56 85 45 2 1 0.651 0.217 0.329 0.174 0.008 0.004 chr14 69564799 69579871
CCDC178 28 3 152 73 0 0 0.109 0.012 0.589 0.283 0.000 0.000 chr18 32932406 33445721
CCDC179 222 85 33 17 1 1 0.860 0.329 0.128 0.066 0.004 0.004 chr11 22841922 22865474
CCDC17 216 81 40 23 1 0 0.837 0.314 0.155 0.089 0.004 0.000 chr1 45615044 45629054
CCDC180 181 67 63 32 0 0 0.702 0.260 0.244 0.124 0.000 0.000 chr9 97302659 97383751
CCDC181 182 50 71 51 0 0 0.705 0.194 0.275 0.198 0.000 0.000 chr1 169389870 169432474
CCDC182 226 82 31 22 1 1 0.876 0.318 0.120 0.085 0.004 0.004 chr17 57739495 57750299
CCDC183 198 55 49 40 1 0 0.767 0.213 0.190 0.155 0.004 0.000 chr9 136791338 136812741
CCDC184 204 72 52 31 1 1 0.791 0.279 0.202 0.120 0.004 0.004 chr12 48178644 48190926
CCDC185 197 69 60 35 0 0 0.764 0.267 0.233 0.136 0.000 0.000 chr1 223388415 223400465
CCDC186 138 34 99 60 0 0 0.535 0.132 0.384 0.233 0.000 0.000 chr10 114115862 114179203
CCDC187 199 65 37 26 0 0 0.771 0.252 0.143 0.101 0.000 0.000 chr9 136244973 136309094
CCDC188 203 71 45 25 0 0 0.787 0.275 0.174 0.097 0.000 0.000 chr22 20143416 20156055
CCDC18 157 50 91 50 0 0 0.609 0.194 0.353 0.194 0.000 0.000 chr1 93175724 93283730
CCDC190 230 87 24 15 1 1 0.891 0.337 0.093 0.058 0.004 0.004 chr1 162846020 162866175
CCDC191 189 68 52 28 0 0 0.733 0.264 0.202 0.109 0.000 0.000 chr3 113959137 114061526
CCDC192 116 32 90 48 0 0 0.450 0.124 0.349 0.186 0.000 0.000 chr5 127698391 127946507
CCDC194 206 67 51 37 0 0 0.798 0.260 0.198 0.143 0.000 0.000 chr19 17382196 17399196
CCDC195 205 76 49 28 2 0 0.795 0.295 0.190 0.109 0.008 0.000 chr2 224698764 224721365
CCDC196 181 60 72 44 0 0 0.702 0.233 0.279 0.171 0.000 0.000 chr14 66481371 66503553
CCDC197 196 57 56 43 1 0 0.760 0.221 0.217 0.167 0.004 0.000 chr14 93992301 94013863
CCDC198 180 56 64 38 0 0 0.698 0.217 0.248 0.147 0.000 0.000 chr14 57464300 57498857
CCDC200 166 43 85 57 0 0 0.643 0.167 0.329 0.221 0.000 0.000 chr17 43216420 43233623
CCDC201 222 77 34 26 1 1 0.860 0.298 0.132 0.101 0.004 0.004 chr7 45854994 45878082
CCDC22 86 20 165 79 0 0 0.333 0.078 0.640 0.306 0.000 0.000 chrX 49230470 49255520
CCDC24 202 73 54 30 0 0 0.783 0.283 0.209 0.116 0.000 0.000 chr1 43986599 44001528
CCDC25 183 63 59 32 0 0 0.709 0.244 0.229 0.124 0.000 0.000 chr8 27728316 27777640
CCDC27 213 64 32 28 0 0 0.826 0.248 0.124 0.109 0.000 0.000 chr1 3747450 3776645
CCDC28A 182 60 65 38 0 0 0.705 0.233 0.252 0.147 0.000 0.000 chr6 138768769 138798319
CCDC28B 207 74 50 30 0 0 0.802 0.287 0.194 0.116 0.000 0.000 chr1 32195595 32210387
CCDC30 161 46 78 49 0 0 0.624 0.178 0.302 0.190 0.000 0.000 chr1 42458286 42662190
CCDC32 199 72 57 33 0 0 0.771 0.279 0.221 0.128 0.000 0.000 chr15 40548099 40570042
CCDC33 143 41 77 45 0 0 0.554 0.159 0.298 0.174 0.000 0.000 chr15 74231326 74341141
CCDC34 178 57 72 43 0 0 0.690 0.221 0.279 0.167 0.000 0.000 chr11 27333512 27368215
CCDC38 174 49 62 39 0 0 0.674 0.190 0.240 0.151 0.000 0.000 chr12 95862048 95947614
CCDC39 126 26 107 64 0 0 0.488 0.101 0.415 0.248 0.000 0.000 chr3 180609008 180684489
CCDC3 195 68 30 17 0 0 0.756 0.264 0.116 0.066 0.000 0.000 chr10 12891625 13006713
CCDC40 188 57 54 38 0 0 0.729 0.221 0.209 0.147 0.000 0.000 chr17 80031642 80105613
CCDC42 204 66 43 30 0 0 0.791 0.256 0.167 0.116 0.000 0.000 chr17 8724935 8749836
CCDC43 180 55 76 49 0 0 0.698 0.213 0.295 0.190 0.000 0.000 chr17 44672440 44694776
CCDC47 175 55 74 44 0 0 0.678 0.213 0.287 0.171 0.000 0.000 chr17 63740255 63778597