Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CCDC166 211 69 40 29 0 0 0.818 0.267 0.155 0.112 0.000 0.000 chr8 143701694 143713109
view CCDC167 198 70 55 31 0 0 0.767 0.271 0.213 0.120 0.000 0.000 chr6 37477938 37504893
view CCDC168 179 64 68 35 0 0 0.694 0.248 0.264 0.136 0.000 0.000 chr13 102724367 102764072
view CCDC169 181 60 60 33 0 0 0.702 0.233 0.233 0.128 0.000 0.000 chr13 36225775 36302814
view CCDC170 159 52 69 38 0 0 0.616 0.202 0.267 0.147 0.000 0.000 chr6 151489017 151626193
view CCDC171 132 41 81 48 0 0 0.512 0.159 0.314 0.186 0.000 0.000 chr9 15548043 15979037
view CCDC172 168 60 69 34 0 0 0.651 0.233 0.267 0.132 0.000 0.000 chr10 116319448 116385029
view CCDC174 215 78 41 25 0 0 0.833 0.302 0.159 0.097 0.000 0.000 chr3 14646762 14677655
view CCDC175 146 36 95 60 0 0 0.566 0.140 0.368 0.233 0.000 0.000 chr14 59500067 59581812
view CCDC177 168 56 85 45 2 1 0.651 0.217 0.329 0.174 0.008 0.004 chr14 69564799 69579871
view CCDC178 28 3 152 73 0 0 0.109 0.012 0.589 0.283 0.000 0.000 chr18 32932406 33445721
view CCDC179 222 85 33 17 1 1 0.860 0.329 0.128 0.066 0.004 0.004 chr11 22841922 22865474
view CCDC17 216 81 40 23 1 0 0.837 0.314 0.155 0.089 0.004 0.000 chr1 45615044 45629054
view CCDC180 181 67 63 32 0 0 0.702 0.260 0.244 0.124 0.000 0.000 chr9 97302659 97383751
view CCDC181 182 50 71 51 0 0 0.705 0.194 0.275 0.198 0.000 0.000 chr1 169389870 169432474
view CCDC182 226 82 31 22 1 1 0.876 0.318 0.120 0.085 0.004 0.004 chr17 57739495 57750299
view CCDC183 198 55 49 40 1 0 0.767 0.213 0.190 0.155 0.004 0.000 chr9 136791338 136812741
view CCDC184 204 72 52 31 1 1 0.791 0.279 0.202 0.120 0.004 0.004 chr12 48178644 48190926
view CCDC185 197 69 60 35 0 0 0.764 0.267 0.233 0.136 0.000 0.000 chr1 223388415 223400465
view CCDC186 138 34 99 60 0 0 0.535 0.132 0.384 0.233 0.000 0.000 chr10 114115862 114179203
view CCDC187 199 65 37 26 0 0 0.771 0.252 0.143 0.101 0.000 0.000 chr9 136244973 136309094
view CCDC188 203 71 45 25 0 0 0.787 0.275 0.174 0.097 0.000 0.000 chr22 20143416 20156055
view CCDC18 157 50 91 50 0 0 0.609 0.194 0.353 0.194 0.000 0.000 chr1 93175724 93283730
view CCDC190 230 87 24 15 1 1 0.891 0.337 0.093 0.058 0.004 0.004 chr1 162846020 162866175
view CCDC191 189 68 52 28 0 0 0.733 0.264 0.202 0.109 0.000 0.000 chr3 113959137 114061526
view CCDC192 116 32 90 48 0 0 0.450 0.124 0.349 0.186 0.000 0.000 chr5 127698391 127946507
view CCDC194 206 67 51 37 0 0 0.798 0.260 0.198 0.143 0.000 0.000 chr19 17382196 17399196
view CCDC195 205 76 49 28 2 0 0.795 0.295 0.190 0.109 0.008 0.000 chr2 224698764 224721365
view CCDC196 181 60 72 44 0 0 0.702 0.233 0.279 0.171 0.000 0.000 chr14 66481371 66503553
view CCDC197 196 57 56 43 1 0 0.760 0.221 0.217 0.167 0.004 0.000 chr14 93992301 94013863
view CCDC198 180 56 64 38 0 0 0.698 0.217 0.248 0.147 0.000 0.000 chr14 57464300 57498857
view CCDC200 166 43 85 57 0 0 0.643 0.167 0.329 0.221 0.000 0.000 chr17 43216420 43233623
view CCDC201 222 77 34 26 1 1 0.860 0.298 0.132 0.101 0.004 0.004 chr7 45854994 45878082
view CCDC22 86 20 165 79 0 0 0.333 0.078 0.640 0.306 0.000 0.000 chrX 49230470 49255520
view CCDC24 202 73 54 30 0 0 0.783 0.283 0.209 0.116 0.000 0.000 chr1 43986599 44001528
view CCDC25 183 63 59 32 0 0 0.709 0.244 0.229 0.124 0.000 0.000 chr8 27728316 27777640
view CCDC27 213 64 32 28 0 0 0.826 0.248 0.124 0.109 0.000 0.000 chr1 3747450 3776645
view CCDC28A 182 60 65 38 0 0 0.705 0.233 0.252 0.147 0.000 0.000 chr6 138768769 138798319
view CCDC28B 207 74 50 30 0 0 0.802 0.287 0.194 0.116 0.000 0.000 chr1 32195595 32210387
view CCDC30 161 46 78 49 0 0 0.624 0.178 0.302 0.190 0.000 0.000 chr1 42458286 42662190
view CCDC32 199 72 57 33 0 0 0.771 0.279 0.221 0.128 0.000 0.000 chr15 40548099 40570042
view CCDC33 143 41 77 45 0 0 0.554 0.159 0.298 0.174 0.000 0.000 chr15 74231326 74341141
view CCDC34 178 57 72 43 0 0 0.690 0.221 0.279 0.167 0.000 0.000 chr11 27333512 27368215
view CCDC38 174 49 62 39 0 0 0.674 0.190 0.240 0.151 0.000 0.000 chr12 95862048 95947614
view CCDC39 126 26 107 64 0 0 0.488 0.101 0.415 0.248 0.000 0.000 chr3 180609008 180684489
view CCDC3 195 68 30 17 0 0 0.756 0.264 0.116 0.066 0.000 0.000 chr10 12891625 13006713
view CCDC40 188 57 54 38 0 0 0.729 0.221 0.209 0.147 0.000 0.000 chr17 80031642 80105613
view CCDC42 204 66 43 30 0 0 0.791 0.256 0.167 0.116 0.000 0.000 chr17 8724935 8749836
view CCDC43 180 55 76 49 0 0 0.698 0.213 0.295 0.190 0.000 0.000 chr17 44672440 44694776
view CCDC47 175 55 74 44 0 0 0.678 0.213 0.287 0.171 0.000 0.000 chr17 63740255 63778597