Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CBY3 205 67 51 36 1 1 0.795 0.260 0.198 0.140 0.004 0.004 chr5 179673560 179686034
view CC2D1A 184 60 58 33 0 0 0.713 0.233 0.225 0.128 0.000 0.000 chr19 13901201 13935879
view CC2D1B 160 43 87 54 0 0 0.620 0.167 0.337 0.209 0.000 0.000 chr1 52345597 52371205
view CC2D2A 171 52 57 33 0 0 0.663 0.202 0.221 0.128 0.000 0.000 chr4 15464882 15606552
view CC2D2B 155 45 67 43 0 0 0.601 0.174 0.260 0.167 0.000 0.000 chr10 95902975 96038745
view CCAR1 179 64 70 38 0 0 0.694 0.248 0.271 0.147 0.000 0.000 chr10 68716239 68797377
view CCAR2 187 59 46 24 1 1 0.725 0.229 0.178 0.093 0.004 0.004 chr8 22599757 22625471
view CCBE1 120 19 66 49 0 0 0.465 0.074 0.256 0.190 0.000 0.000 chr18 59425939 59702423
view CCDC102A 207 68 39 27 0 0 0.802 0.264 0.151 0.105 0.000 0.000 chr16 57507181 57541571
view CCDC102B 107 26 84 43 0 0 0.415 0.101 0.326 0.167 0.000 0.000 chr18 68793080 69060189
view CCDC103 212 72 42 29 0 0 0.822 0.279 0.163 0.112 0.000 0.000 chr17 44894729 44910390
view CCDC105 219 78 36 25 0 0 0.849 0.302 0.140 0.097 0.000 0.000 chr19 15005726 15028276
view CCDC106 205 58 47 41 0 0 0.795 0.225 0.182 0.159 0.000 0.000 chr19 55643212 55658161
view CCDC107 212 73 46 32 0 0 0.822 0.283 0.178 0.124 0.000 0.000 chr9 35653292 35666511
view CCDC110 213 70 38 30 0 0 0.826 0.271 0.147 0.116 0.000 0.000 chr4 185440182 185476733
view CCDC112 193 63 56 35 0 0 0.748 0.244 0.217 0.136 0.000 0.000 chr5 115262190 115301654
view CCDC113 188 66 60 36 0 0 0.729 0.256 0.233 0.140 0.000 0.000 chr16 58244936 58288836
view CCDC115 191 64 63 39 1 0 0.740 0.248 0.244 0.151 0.004 0.000 chr2 130332933 130347164
view CCDC116 196 57 55 42 0 0 0.760 0.221 0.213 0.163 0.000 0.000 chr22 21627760 21642329
view CCDC117 208 81 47 21 0 0 0.806 0.314 0.182 0.081 0.000 0.000 chr22 28767695 28794295
view CCDC120 79 15 173 84 0 0 0.306 0.058 0.671 0.326 0.000 0.000 chrX 49053999 49074854
view CCDC121 191 70 67 35 0 0 0.740 0.271 0.260 0.136 0.000 0.000 chr2 27620638 27634012
view CCDC122 220 90 35 13 0 0 0.853 0.349 0.136 0.050 0.000 0.000 chr13 43831352 43884740
view CCDC124 209 65 41 32 0 0 0.810 0.252 0.159 0.124 0.000 0.000 chr19 17928015 17948985
view CCDC125 170 54 76 45 0 0 0.659 0.209 0.295 0.174 0.000 0.000 chr5 69275175 69337801
view CCDC126 189 59 56 36 0 0 0.733 0.229 0.217 0.140 0.000 0.000 chr7 23592382 23649708
view CCDC127 202 72 51 29 0 0 0.783 0.279 0.198 0.112 0.000 0.000 chr5 191868 223153
view CCDC12 176 56 66 40 0 0 0.682 0.217 0.256 0.155 0.000 0.000 chr3 46916730 46981745
view CCDC134 189 65 55 27 0 0 0.733 0.252 0.213 0.105 0.000 0.000 chr22 41795679 41837164
view CCDC136 189 70 60 29 0 0 0.733 0.271 0.233 0.112 0.000 0.000 chr7 128786968 128827130
view CCDC137 205 71 48 29 0 0 0.795 0.275 0.186 0.112 0.000 0.000 chr17 81661737 81678899
view CCDC138 109 28 128 69 0 0 0.422 0.109 0.496 0.267 0.000 0.000 chr2 108781771 108881578
view CCDC13 159 51 81 45 0 0 0.616 0.198 0.314 0.174 0.000 0.000 chr3 42700756 42778253
view CCDC141 136 33 75 51 0 0 0.527 0.128 0.291 0.198 0.000 0.000 chr2 178824757 179055137
view CCDC142 184 61 70 42 0 0 0.713 0.236 0.271 0.163 0.000 0.000 chr2 74467832 74487998
view CCDC144A 158 54 80 43 0 0 0.612 0.209 0.310 0.167 0.000 0.000 chr17 16685241 16782881
view CCDC146 123 33 90 54 0 0 0.477 0.128 0.349 0.209 0.000 0.000 chr7 77117615 77300204
view CCDC148 131 42 80 44 0 0 0.508 0.163 0.310 0.171 0.000 0.000 chr2 158166073 158461753
view CCDC149 176 62 49 27 0 0 0.682 0.240 0.190 0.105 0.000 0.000 chr4 24798514 24918042
view CCDC14 183 65 70 38 0 0 0.709 0.252 0.271 0.147 0.000 0.000 chr3 123908422 123966229
view CCDC150 105 16 129 75 0 0 0.407 0.062 0.500 0.291 0.000 0.000 chr2 196634715 196737801
view CCDC152 173 58 78 43 0 0 0.671 0.225 0.302 0.167 0.000 0.000 chr5 42751818 42807439
view CCDC153 213 71 39 29 0 0 0.826 0.275 0.151 0.112 0.000 0.000 chr11 119185254 119200841
view CCDC154 207 65 47 37 0 0 0.802 0.252 0.182 0.143 0.000 0.000 chr16 1429383 1449556
view CCDC157 219 77 32 24 0 0 0.849 0.298 0.124 0.093 0.000 0.000 chr22 30352007 30383673
view CCDC158 173 61 65 29 0 0 0.671 0.236 0.252 0.112 0.000 0.000 chr4 76308039 76426141
view CCDC159 178 57 69 41 0 0 0.690 0.221 0.267 0.159 0.000 0.000 chr19 11341519 11359944
view CCDC15 174 55 65 34 0 0 0.674 0.213 0.252 0.132 0.000 0.000 chr11 124949202 125046489
view CCDC160 92 31 164 73 0 0 0.357 0.120 0.636 0.283 0.000 0.000 chrX 134232182 134251842
view CCDC163 203 68 52 34 0 0 0.787 0.264 0.202 0.132 0.000 0.000 chr1 45488866 45505073