Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CASTOR1 211 70 44 34 0 0 0.818 0.271 0.171 0.132 0.000 0.000 chr22 30280117 30294505
CASTOR2 113 14 118 74 0 0 0.438 0.054 0.457 0.287 0.000 0.000 chr7 74959705 75036528
CAST 178 61 56 34 0 0 0.690 0.236 0.217 0.132 0.000 0.000 chr5 96657376 96779683
CASZ1 117 21 79 47 0 0 0.453 0.081 0.306 0.182 0.000 0.000 chr1 10631604 10801646
CATIP 182 54 73 49 0 0 0.705 0.209 0.283 0.190 0.000 0.000 chr2 218351857 218373094
CATSPER1 203 67 51 34 0 0 0.787 0.260 0.198 0.132 0.000 0.000 chr11 66011752 66031479
CATSPER2 195 72 60 31 0 0 0.756 0.279 0.233 0.120 0.000 0.000 chr15 43623503 43653844
CATSPER3 189 61 50 31 0 0 0.733 0.236 0.194 0.120 0.000 0.000 chr5 134962907 135016696
CATSPER4 198 66 48 31 2 1 0.767 0.256 0.186 0.120 0.008 0.004 chr1 26185602 26207964
CATSPERB 135 44 63 30 0 0 0.523 0.171 0.244 0.116 0.000 0.000 chr14 91575698 91737086
CATSPERD 167 39 62 47 0 0 0.647 0.151 0.240 0.182 0.000 0.000 chr19 5715637 5783734
CATSPERE 102 25 74 41 0 0 0.395 0.097 0.287 0.159 0.000 0.000 chr1 244456273 244645504
CATSPERG 187 66 56 30 0 0 0.725 0.256 0.217 0.116 0.000 0.000 chr19 38330830 38375943
CATSPERZ 195 63 57 37 1 0 0.756 0.244 0.221 0.143 0.004 0.000 chr11 64295358 64309770
CAT 211 82 44 20 0 0 0.818 0.318 0.171 0.078 0.000 0.000 chr11 34433934 34477060
CAV1 170 50 77 49 0 0 0.659 0.194 0.298 0.190 0.000 0.000 chr7 116520036 116566179
CAV2 186 59 67 43 1 0 0.721 0.229 0.260 0.167 0.004 0.000 chr7 116494738 116513541
CAV3 237 89 20 15 0 0 0.919 0.345 0.078 0.058 0.000 0.000 chr3 8728802 8751758
CAVIN1 168 57 77 40 0 0 0.651 0.221 0.298 0.155 0.000 0.000 chr17 42397449 42428256
CAVIN2 190 62 64 40 1 0 0.736 0.240 0.248 0.155 0.004 0.000 chr2 191829310 191852088
CAVIN3 212 80 44 23 1 1 0.822 0.310 0.171 0.089 0.004 0.004 chr11 6313946 6325501
CAVIN4 190 56 64 45 0 0 0.736 0.217 0.248 0.174 0.000 0.000 chr9 100573079 100593389
CBARP 203 66 41 26 1 1 0.787 0.256 0.159 0.101 0.004 0.004 chr19 1223287 1243005
CBFA2T2 148 41 82 47 0 0 0.574 0.159 0.318 0.182 0.000 0.000 chr20 33485096 33655030
CBFA2T3 141 33 69 37 0 0 0.547 0.128 0.267 0.143 0.000 0.000 chr16 88869858 88982207
CBFB 105 16 134 75 0 0 0.407 0.062 0.519 0.291 0.000 0.000 chr16 67024149 67106058
CBLB 189 74 45 20 0 0 0.733 0.287 0.174 0.078 0.000 0.000 chr3 105650461 105874012
CBLC 171 58 71 34 0 0 0.663 0.225 0.275 0.132 0.000 0.000 chr19 44772890 44805652
CBLIF 170 56 76 43 0 0 0.659 0.217 0.295 0.167 0.000 0.000 chr11 59824273 59850499
CBLL1 215 80 35 20 0 0 0.833 0.310 0.136 0.078 0.000 0.000 chr7 107739142 107766667
CBLL2 109 38 145 65 1 1 0.422 0.147 0.562 0.252 0.004 0.004 chrX 22267913 22279461
CBLN1 197 64 58 40 1 0 0.764 0.248 0.225 0.155 0.004 0.000 chr16 49272917 49286838
CBLN2 207 83 48 20 0 0 0.802 0.322 0.186 0.078 0.000 0.000 chr18 72531681 72549342
CBLN3 225 86 31 18 0 0 0.872 0.333 0.120 0.070 0.000 0.000 chr14 24421545 24434668
CBLN4 212 81 42 23 1 0 0.822 0.314 0.163 0.089 0.004 0.000 chr20 55992357 56010519
CBL 181 66 64 33 0 0 0.702 0.256 0.248 0.128 0.000 0.000 chr11 119201339 119313149
CBR1 214 75 43 29 0 0 0.829 0.291 0.167 0.112 0.000 0.000 chr21 36065024 36078164
CBR3 211 75 46 29 0 0 0.818 0.291 0.178 0.112 0.000 0.000 chr21 36130079 36151562
CBR4 141 33 99 58 0 0 0.547 0.128 0.384 0.225 0.000 0.000 chr4 168982590 169015255
CBS 149 46 98 52 0 0 0.578 0.178 0.380 0.202 0.000 0.000 chr21 43048191 43080835
CBX1 197 70 54 30 0 0 0.764 0.271 0.209 0.116 0.000 0.000 chr17 48065059 48106478
CBX2 232 80 23 22 0 0 0.899 0.310 0.089 0.085 0.000 0.000 chr17 79773148 79792983
CBX3 204 77 49 25 0 0 0.791 0.298 0.190 0.097 0.000 0.000 chr7 26196745 26218607
CBX4 209 69 44 31 0 0 0.810 0.267 0.171 0.120 0.000 0.000 chr17 79828156 79844440
CBX5 183 57 58 42 0 0 0.709 0.221 0.225 0.163 0.000 0.000 chr12 54225942 54285122
CBX6 202 65 52 38 1 1 0.783 0.252 0.202 0.147 0.004 0.004 chr22 38856422 38877216
CBX7 189 57 65 44 0 0 0.733 0.221 0.252 0.171 0.000 0.000 chr22 39125772 39157680
CBX8 205 61 52 43 0 0 0.795 0.236 0.202 0.167 0.000 0.000 chr17 79787132 79802077
CBY1 191 70 61 31 0 0 0.740 0.271 0.236 0.120 0.000 0.000 chr22 38651638 38678850
CBY2 219 76 33 24 1 0 0.849 0.295 0.128 0.093 0.004 0.000 chr13 45697320 45719559