Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CCNF 137 28 99 65 0 0 0.531 0.109 0.384 0.252 0.000 0.000 chr16 2424447 2463854
view CCNG1 210 76 43 26 0 0 0.814 0.295 0.167 0.101 0.000 0.000 chr5 163432595 163450016
view CCNG2 213 75 41 28 0 0 0.826 0.291 0.159 0.109 0.000 0.000 chr4 77152207 77175060
view CCNH 176 61 74 39 1 0 0.682 0.236 0.287 0.151 0.004 0.000 chr5 87389274 87417930
view CCNI2 180 66 77 38 0 0 0.698 0.256 0.298 0.147 0.000 0.000 chr5 132742426 132759403
view CCNI 193 63 58 38 0 0 0.748 0.244 0.225 0.147 0.000 0.000 chr4 77042155 77080989
view CCNJL 168 49 60 37 0 0 0.651 0.190 0.233 0.143 0.000 0.000 chr5 160244083 160317564
view CCNJ 208 75 44 25 0 0 0.806 0.291 0.171 0.097 0.000 0.000 chr10 96038583 96065870
view CCNK 162 51 82 42 0 0 0.628 0.198 0.318 0.163 0.000 0.000 chr14 99476409 99517440
view CCNL1 212 76 44 27 1 1 0.822 0.295 0.171 0.105 0.004 0.004 chr3 157142553 157165147
view CCNL2 184 57 67 41 0 0 0.713 0.221 0.260 0.159 0.000 0.000 chr1 1380711 1404335
view CCNO 193 66 61 36 1 0 0.748 0.256 0.236 0.140 0.004 0.000 chr5 55226152 55238608
view CCNP 206 71 48 30 1 1 0.798 0.275 0.186 0.116 0.004 0.004 chr19 40217208 40231689
view CCNQ 87 26 166 76 0 0 0.337 0.101 0.643 0.295 0.000 0.000 chrX 153582925 153604139
view CCNT1 192 65 62 36 0 0 0.744 0.252 0.240 0.140 0.000 0.000 chr12 48683458 48721707
view CCNT2 201 77 53 26 0 0 0.779 0.298 0.205 0.101 0.000 0.000 chr2 134913822 134964342
view CCNYL1 176 53 67 43 0 0 0.682 0.205 0.260 0.167 0.000 0.000 chr2 207706640 207761174
view CCNY 147 48 87 47 0 0 0.570 0.186 0.337 0.182 0.000 0.000 chr10 35331509 35577667
view CCP110 192 70 62 33 0 0 0.744 0.271 0.240 0.128 0.000 0.000 chr16 19518942 19558408
view CCPG1 176 54 69 43 0 0 0.682 0.209 0.267 0.167 0.000 0.000 chr15 55350239 55413359
view CCR10 182 55 73 47 0 0 0.705 0.213 0.283 0.182 0.000 0.000 chr17 42673889 42686843
view CCR1 179 57 75 44 0 0 0.694 0.221 0.291 0.171 0.000 0.000 chr3 46196711 46213313
view CCR2 218 84 38 19 1 1 0.845 0.326 0.147 0.074 0.004 0.004 chr3 46349111 46365940
view CCR3 203 80 49 20 1 1 0.787 0.310 0.190 0.078 0.004 0.004 chr3 46237460 46271706
view CCR4 193 63 59 38 1 1 0.748 0.244 0.229 0.147 0.004 0.004 chr3 32946644 32961349
view CCR5 210 84 46 20 1 0 0.814 0.326 0.178 0.078 0.004 0.000 chr3 46365946 46381206
view CCR6 229 89 27 14 0 0 0.888 0.345 0.105 0.054 0.000 0.000 chr6 167118096 167144141
view CCR7 203 67 47 31 0 0 0.787 0.260 0.182 0.120 0.000 0.000 chr17 40548769 40570472
view CCR8 198 67 57 37 2 0 0.767 0.260 0.221 0.143 0.008 0.000 chr3 39324709 39338680
view CCR9 211 86 42 16 0 0 0.818 0.333 0.163 0.062 0.000 0.000 chr3 45881543 45908174
view CCRL2 207 81 49 22 1 1 0.802 0.314 0.190 0.085 0.004 0.004 chr3 46402259 46414523
view CCSAP 217 74 37 27 0 0 0.841 0.287 0.143 0.105 0.000 0.000 chr1 229316015 229348047
view CCSER1 19 0 93 40 0 0 0.074 0.000 0.360 0.155 0.000 0.000 chr4 90122394 91610295
view CCSER2 184 62 51 33 0 0 0.713 0.240 0.198 0.128 0.000 0.000 chr10 84323589 84523517
view CCS 201 73 51 27 0 0 0.779 0.283 0.198 0.105 0.000 0.000 chr11 66588185 66611019
view CCT2 204 77 47 24 1 1 0.791 0.298 0.182 0.093 0.004 0.004 chr12 69580459 69606570
view CCT3 195 67 57 34 0 0 0.756 0.260 0.221 0.132 0.000 0.000 chr1 156303968 156343292
view CCT4 206 71 42 29 0 0 0.798 0.275 0.163 0.112 0.000 0.000 chr2 61863085 61893656
view CCT5 186 60 67 41 0 0 0.721 0.233 0.260 0.159 0.000 0.000 chr5 10245280 10271389
view CCT6A 213 77 44 27 0 0 0.826 0.298 0.171 0.105 0.000 0.000 chr7 56046765 56068989
view CCT6B 200 74 47 22 0 0 0.775 0.287 0.182 0.085 0.000 0.000 chr17 34922861 34966460
view CCT7 188 60 65 40 0 0 0.729 0.233 0.252 0.155 0.000 0.000 chr2 73229308 73258005
view CCT8L2 215 78 36 22 1 0 0.833 0.302 0.140 0.085 0.004 0.000 chr22 16585751 16597810
view CCT8 211 76 47 29 0 0 0.818 0.295 0.182 0.112 0.000 0.000 chr21 29051326 29078648
view CCZ1B 177 71 69 27 0 0 0.686 0.275 0.267 0.105 0.000 0.000 chr7 6793937 6831275
view CCZ1 57 2 98 30 0 0 0.221 0.008 0.380 0.116 0.000 0.000 chr7 5893733 5931550
view CD101 212 72 36 24 0 0 0.822 0.279 0.140 0.093 0.000 0.000 chr1 116996760 117041552
view CD109 180 65 56 33 0 0 0.698 0.252 0.217 0.128 0.000 0.000 chr6 73691203 73833313
view CD14 204 69 51 35 3 1 0.791 0.267 0.198 0.136 0.012 0.004 chr5 140626732 140638175
view CD151 222 74 26 22 2 1 0.860 0.287 0.101 0.085 0.008 0.004 chr11 827952 843831