Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CDKN2AIP 234 90 22 14 1 1 0.907 0.349 0.085 0.054 0.004 0.004 chr4 183439636 183454064
CDKN2A 207 72 48 30 0 0 0.802 0.279 0.186 0.116 0.000 0.000 chr9 21962752 21979857
CDKN2A 201 63 46 33 0 0 0.779 0.244 0.178 0.128 0.000 0.000 chr9 21962752 21999392
CDKN2B 207 68 51 37 0 0 0.802 0.264 0.198 0.143 0.000 0.000 chr9 21997903 22014305
CDKN2C 168 45 87 58 0 0 0.651 0.174 0.337 0.225 0.000 0.000 chr1 50965245 50979634
CDKN2D 204 72 51 30 0 0 0.791 0.279 0.198 0.116 0.000 0.000 chr19 10561460 10573979
CDKN3 209 76 42 24 0 0 0.810 0.295 0.163 0.093 0.000 0.000 chr14 54392007 54425218
CDNF 208 69 42 29 0 0 0.806 0.267 0.163 0.112 0.000 0.000 chr10 14814245 14843037
CDO1 185 54 65 43 0 0 0.717 0.209 0.252 0.167 0.000 0.000 chr5 115799733 115821659
CDON 166 42 58 40 0 0 0.643 0.163 0.225 0.155 0.000 0.000 chr11 125951821 126067866
CDPF1 139 23 114 79 0 0 0.539 0.089 0.442 0.306 0.000 0.000 chr22 46239013 46255293
CDR2L 175 48 68 43 0 0 0.678 0.186 0.264 0.167 0.000 0.000 chr17 74982632 75010800
CDR2 154 43 85 50 0 0 0.597 0.167 0.329 0.194 0.000 0.000 chr16 22340936 22379619
CDRT15L2 197 65 56 37 2 1 0.764 0.252 0.217 0.143 0.008 0.004 chr17 20574724 20585911
CDRT15 230 87 24 15 1 0 0.891 0.337 0.093 0.058 0.004 0.000 chr17 14230673 14241862
CDRT4 214 74 37 26 0 0 0.829 0.287 0.143 0.101 0.000 0.000 chr17 15431015 15472621
CDS1 191 66 51 28 0 0 0.740 0.256 0.198 0.109 0.000 0.000 chr4 84578127 84656334
CDS2 173 50 59 41 0 0 0.671 0.194 0.229 0.159 0.000 0.000 chr20 5122008 5202887
CDSN 222 82 35 22 0 0 0.860 0.318 0.136 0.085 0.000 0.000 chr6 31110087 31125446
CDT1 221 77 33 24 0 0 0.857 0.298 0.128 0.093 0.000 0.000 chr16 88798789 88814258
CDV3 192 60 60 41 0 0 0.744 0.233 0.233 0.159 0.000 0.000 chr3 133568686 133595261
CDX1 208 66 42 32 0 0 0.806 0.256 0.163 0.124 0.000 0.000 chr5 150161778 150189558
CDX2 208 75 43 24 0 0 0.806 0.291 0.167 0.093 0.000 0.000 chr13 27955918 27974315
CDX4 80 17 177 87 0 0 0.310 0.066 0.686 0.337 0.000 0.000 chrX 73442053 73460171
CDY1B 7 3 92 33 0 0 0.027 0.012 0.357 0.128 0.000 0.000 chrY 24040793 24053019
CDY1 17 5 97 43 0 0 0.066 0.019 0.376 0.167 0.000 0.000 chrY 25617117 25629902
CDY2A 57 31 71 24 0 0 0.221 0.120 0.275 0.093 0.000 0.000 chrY 18020787 18032746
CDY2B 5 2 56 10 0 0 0.019 0.008 0.217 0.039 0.000 0.000 chrY 17873260 17885220
CDYL2 128 25 66 46 0 0 0.496 0.097 0.256 0.178 0.000 0.000 chr16 80592907 80809598
CDYL 124 30 106 56 0 0 0.481 0.116 0.411 0.217 0.000 0.000 chr6 4771404 4960544
CEACAM16 224 76 32 27 0 0 0.868 0.295 0.124 0.105 0.000 0.000 chr19 44694151 44715718
CEACAM18 209 69 44 32 0 0 0.810 0.267 0.171 0.124 0.000 0.000 chr19 51473539 51496301
CEACAM19 194 59 50 35 0 0 0.752 0.229 0.194 0.136 0.000 0.000 chr19 44666482 44689355
CEACAM1 144 26 105 70 0 0 0.558 0.101 0.407 0.271 0.000 0.000 chr19 42502306 42533481
CEACAM20 218 82 32 18 0 0 0.845 0.318 0.124 0.070 0.000 0.000 chr19 44501159 44534675
CEACAM21 196 69 53 30 0 0 0.760 0.267 0.205 0.116 0.000 0.000 chr19 41571166 41591844
CEACAM3 207 75 46 27 0 0 0.802 0.291 0.178 0.105 0.000 0.000 chr19 41791587 41816554
CEACAM4 218 79 37 24 0 0 0.845 0.306 0.143 0.093 0.000 0.000 chr19 41614015 41632074
CEACAM5 186 54 62 45 0 0 0.721 0.209 0.240 0.174 0.000 0.000 chr19 41703626 41735433
CEACAM6 212 81 40 19 1 0 0.822 0.314 0.155 0.074 0.004 0.000 chr19 41750530 41777211
CEACAM7 205 69 49 32 1 1 0.795 0.267 0.190 0.124 0.004 0.004 chr19 41668303 41693270
CEACAM8 156 31 90 65 1 0 0.605 0.120 0.349 0.252 0.004 0.000 chr19 42575243 42599924
CEBPA 224 79 32 24 0 0 0.868 0.306 0.124 0.093 0.000 0.000 chr19 33294934 33307534
CEBPB 191 55 66 49 0 0 0.740 0.213 0.256 0.190 0.000 0.000 chr20 50185830 50197668
CEBPD 157 42 99 62 0 0 0.609 0.163 0.384 0.240 0.000 0.000 chr8 47731913 47743164
CEBPE 228 87 30 18 0 0 0.884 0.337 0.116 0.070 0.000 0.000 chr14 23112306 23124255
CEBPG 217 80 36 22 0 0 0.841 0.310 0.140 0.085 0.000 0.000 chr19 33368709 33387686
CEBPZOS 232 94 24 10 0 0 0.899 0.364 0.093 0.039 0.000 0.000 chr2 37191496 37209743
CEBPZ 218 84 34 17 0 0 0.845 0.326 0.132 0.066 0.000 0.000 chr2 37196612 37236596
CECR2 161 46 44 27 0 0 0.624 0.178 0.171 0.105 0.000 0.000 chr22 17364460 17563151