Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CETN2 95 31 161 72 0 0 0.368 0.120 0.624 0.279 0.000 0.000 chrX 152821994 152835757
view CETN3 173 48 73 49 0 0 0.671 0.186 0.283 0.190 0.000 0.000 chr5 90387257 90414756
view CETP 230 82 23 19 0 0 0.891 0.318 0.089 0.074 0.000 0.000 chr16 56956950 56988845
view CFAP100 210 70 36 26 0 0 0.814 0.271 0.140 0.101 0.000 0.000 chr3 126389909 126441556
view CFAP107 167 50 77 45 0 0 0.647 0.194 0.298 0.174 0.000 0.000 chr1 12741200 12768699
view CFAP119 132 27 122 75 0 0 0.512 0.105 0.473 0.291 0.000 0.000 chr16 30752423 30767062
view CFAP126 174 55 79 47 0 0 0.674 0.213 0.306 0.182 0.000 0.000 chr1 161359733 161372876
view CFAP141 185 54 64 44 0 0 0.717 0.209 0.248 0.171 0.000 0.000 chr1 154194085 154211333
view CFAP144 197 56 57 45 0 0 0.764 0.217 0.221 0.174 0.000 0.000 chr1 43142904 43161396
view CFAP157 176 47 76 52 0 0 0.682 0.182 0.295 0.202 0.000 0.000 chr9 127701988 127721002
view CFAP161 223 83 31 18 0 0 0.864 0.322 0.120 0.070 0.000 0.000 chr15 81129270 81154179
view CFAP206 187 62 56 35 0 0 0.725 0.240 0.217 0.136 0.000 0.000 chr6 87402972 87469465
view CFAP20DC 101 29 103 54 0 0 0.391 0.112 0.399 0.209 0.000 0.000 chr3 58737008 59055025
view CFAP20 199 72 51 28 0 0 0.771 0.279 0.198 0.109 0.000 0.000 chr16 58108592 58134381
view CFAP210 194 74 57 27 0 0 0.752 0.287 0.221 0.105 0.000 0.000 chr2 169640425 169699405
view CFAP221 112 32 99 53 0 0 0.434 0.124 0.384 0.205 0.000 0.000 chr2 119539449 119661661
view CFAP251 176 57 66 36 0 0 0.682 0.221 0.256 0.140 0.000 0.000 chr12 121913592 122008919
view CFAP276 201 71 51 29 0 0 0.779 0.275 0.198 0.112 0.000 0.000 chr1 109100951 109117747
view CFAP298 207 73 43 27 1 1 0.802 0.283 0.167 0.105 0.004 0.004 chr21 32594354 32617377
view CFAP299 48 11 136 62 0 0 0.186 0.043 0.527 0.240 0.000 0.000 chr4 80330730 80968750
view CFAP300 172 54 69 38 0 0 0.667 0.209 0.267 0.147 0.000 0.000 chr11 102042437 102089554
view CFAP36 199 73 53 28 0 0 0.771 0.283 0.205 0.109 0.000 0.000 chr2 55514718 55550079
view CFAP410 217 73 36 27 0 0 0.841 0.283 0.140 0.105 0.000 0.000 chr21 44323944 44344390
view CFAP418 193 69 59 33 0 0 0.748 0.267 0.229 0.128 0.000 0.000 chr8 95239913 95274201
view CFAP43 152 56 90 42 0 0 0.589 0.217 0.349 0.163 0.000 0.000 chr10 104124888 104237364
view CFAP44 173 57 67 42 0 0 0.671 0.221 0.260 0.163 0.000 0.000 chr3 113281930 113446493
view CFAP45 204 71 47 29 1 0 0.791 0.275 0.182 0.112 0.004 0.000 chr1 159867364 159905165
view CFAP46 122 21 90 53 0 0 0.473 0.081 0.349 0.205 0.000 0.000 chr10 132803392 132947570
view CFAP47 46 6 190 90 0 0 0.178 0.023 0.736 0.349 0.000 0.000 chrX 35914734 36390317
view CFAP52 157 45 71 41 0 0 0.609 0.174 0.275 0.159 0.000 0.000 chr17 9571642 9648447
view CFAP53 200 68 45 27 0 0 0.775 0.264 0.174 0.105 0.000 0.000 chr18 50222193 50271495
view CFAP54 133 37 77 47 0 0 0.516 0.143 0.298 0.182 0.000 0.000 chr12 96484577 96880555
view CFAP57 153 39 81 49 0 0 0.593 0.151 0.314 0.190 0.000 0.000 chr1 43167330 43259358
view CFAP58 153 43 76 43 0 0 0.593 0.167 0.295 0.167 0.000 0.000 chr10 104348833 104460102
view CFAP61 117 21 83 50 0 0 0.453 0.081 0.322 0.194 0.000 0.000 chr20 20047532 20365698
view CFAP65 160 53 78 37 0 0 0.620 0.205 0.302 0.143 0.000 0.000 chr2 218997846 219046516
view CFAP68 195 65 63 40 0 0 0.756 0.252 0.244 0.155 0.000 0.000 chr11 111874541 111890975
view CFAP69 168 55 68 36 1 1 0.651 0.213 0.264 0.140 0.004 0.004 chr7 90240174 90316063
view CFAP70 109 41 132 56 0 0 0.422 0.159 0.512 0.217 0.000 0.000 chr10 73248762 73363864
view CFAP73 162 64 88 36 1 1 0.628 0.248 0.341 0.140 0.004 0.004 chr12 113144724 113164276
view CFAP74 138 31 72 37 0 0 0.535 0.120 0.279 0.143 0.000 0.000 chr1 1916957 2008786
view CFAP77 160 43 58 38 0 0 0.620 0.167 0.225 0.147 0.000 0.000 chr9 132405211 132578319
view CFAP90 209 74 36 24 0 0 0.810 0.287 0.140 0.093 0.000 0.000 chr5 7825378 7856133
view CFAP91 192 67 46 28 0 0 0.744 0.260 0.178 0.109 0.000 0.000 chr3 119698022 119772102
view CFAP92 170 47 70 47 0 0 0.659 0.182 0.271 0.182 0.000 0.000 chr3 128904873 128999076
view CFAP95 189 62 51 30 0 0 0.733 0.240 0.198 0.116 0.000 0.000 chr9 69815817 69911227
view CFAP97D1 200 63 54 38 0 0 0.775 0.244 0.209 0.147 0.000 0.000 chr17 43775435 43792620
view CFAP97D2 199 69 48 31 0 0 0.771 0.267 0.186 0.120 0.000 0.000 chr13 114174257 114228085
view CFAP97 174 56 73 44 0 0 0.674 0.217 0.283 0.171 0.000 0.000 chr4 185154665 185209000
view CFAP99 174 51 67 42 0 0 0.674 0.198 0.260 0.163 0.000 0.000 chr4 2413955 2468002