Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CFB 215 74 40 29 0 0 0.833 0.287 0.155 0.112 0.000 0.000 chr6 31941095 31957084
CFC1B 6 0 16 0 0 0 0.023 0.000 0.062 0.000 0.000 0.000 chr2 130516222 130533603
CFC1 121 50 59 34 68 14 0.469 0.194 0.229 0.132 0.264 0.054 chr2 130587165 130604575
CFDP1 156 48 80 47 0 0 0.605 0.186 0.310 0.182 0.000 0.000 chr16 75288710 75438503
CFD 143 46 92 41 1 1 0.554 0.178 0.357 0.159 0.004 0.004 chr19 854664 868641
CFHR1 137 65 92 40 0 0 0.531 0.252 0.357 0.155 0.000 0.000 chr1 196814731 196837189
CFHR2 184 61 70 41 0 0 0.713 0.236 0.271 0.159 0.000 0.000 chr1 196938738 196964622
CFHR3 130 62 97 36 0 0 0.504 0.240 0.376 0.140 0.000 0.000 chr1 196769840 196800407
CFHR4 174 58 75 43 0 0 0.674 0.225 0.291 0.167 0.000 0.000 chr1 196883052 196923633
CFHR5 177 58 72 43 0 0 0.686 0.225 0.279 0.167 0.000 0.000 chr1 196972556 197014678
CFH 153 46 86 49 0 0 0.593 0.178 0.333 0.190 0.000 0.000 chr1 196647043 196752504
CFI 176 61 59 31 1 1 0.682 0.236 0.229 0.120 0.004 0.004 chr4 109735695 109806999
CFL1 196 68 57 33 1 0 0.760 0.264 0.221 0.128 0.004 0.000 chr11 65849673 65863180
CFL2 215 72 41 32 0 0 0.833 0.279 0.159 0.124 0.000 0.000 chr14 34704113 34719593
CFLAR 116 15 107 65 0 0 0.450 0.058 0.415 0.252 0.000 0.000 chr2 201111164 201181687
CFP 89 23 163 77 0 0 0.345 0.089 0.632 0.298 0.000 0.000 chrX 47618282 47634930
CFTR 100 26 119 62 0 0 0.388 0.101 0.461 0.240 0.000 0.000 chr7 117475025 117673665
CGAS 204 70 49 32 1 1 0.791 0.271 0.190 0.124 0.004 0.004 chr6 73418711 73457297
CGA 209 79 46 23 0 0 0.810 0.306 0.178 0.089 0.000 0.000 chr6 87080498 87100106
CGB1 187 51 58 41 0 0 0.725 0.198 0.225 0.159 0.000 0.000 chr19 49030569 49041895
CGB2 187 52 57 39 0 0 0.725 0.202 0.221 0.151 0.000 0.000 chr19 49026890 49038238
CGB3 195 57 54 39 0 0 0.756 0.221 0.209 0.151 0.000 0.000 chr19 49017869 49029333
CGB5 190 58 57 38 0 0 0.736 0.225 0.221 0.147 0.000 0.000 chr19 49038848 49050311
CGB7 210 73 46 30 0 0 0.814 0.283 0.178 0.116 0.000 0.000 chr19 49049274 49062749
CGB8 196 59 52 37 0 0 0.760 0.229 0.202 0.143 0.000 0.000 chr19 49042638 49054111
CGGBP1 178 55 79 49 0 0 0.690 0.213 0.306 0.190 0.000 0.000 chr3 88046950 88064005
CGNL1 146 31 55 37 0 0 0.566 0.120 0.213 0.143 0.000 0.000 chr15 57371505 57555717
CGN 190 62 53 30 0 0 0.736 0.240 0.205 0.116 0.000 0.000 chr1 151506387 151543692
CGREF1 175 47 74 49 0 0 0.678 0.182 0.287 0.190 0.000 0.000 chr2 27095594 27124128
CGRRF1 168 62 84 39 0 0 0.651 0.240 0.326 0.151 0.000 0.000 chr14 54504906 54544292
CH25H 191 58 66 46 0 0 0.740 0.225 0.256 0.178 0.000 0.000 chr10 89200629 89212317
CHAC1 209 73 44 29 1 0 0.810 0.283 0.171 0.112 0.004 0.000 chr15 40948471 40961512
CHAC2 212 79 45 25 0 0 0.822 0.306 0.174 0.097 0.000 0.000 chr2 53762804 53780196
CHADL 206 66 47 35 1 0 0.798 0.256 0.182 0.136 0.004 0.000 chr22 41224513 41245931
CHAD 192 63 60 36 0 0 0.744 0.244 0.233 0.140 0.000 0.000 chr17 50459496 50473880
CHAF1A 191 62 56 36 0 0 0.740 0.240 0.217 0.140 0.000 0.000 chr19 4397640 4448397
CHAF1B 172 47 70 50 0 0 0.667 0.182 0.271 0.194 0.000 0.000 chr21 36380392 36424015
CHAMP1 206 81 48 23 0 0 0.798 0.314 0.186 0.089 0.000 0.000 chr13 114309503 114332322
CHAT 208 69 37 26 0 0 0.806 0.267 0.143 0.101 0.000 0.000 chr10 49609037 49672942
CHCHD10 215 72 40 30 0 0 0.833 0.279 0.155 0.116 0.000 0.000 chr22 23760834 23772972
CHCHD1 171 56 85 49 1 0 0.663 0.217 0.329 0.190 0.004 0.000 chr10 73777048 73788652
CHCHD2 220 82 35 20 1 1 0.853 0.318 0.136 0.078 0.004 0.004 chr7 56096573 56111476
CHCHD3 154 43 71 45 0 0 0.597 0.167 0.275 0.174 0.000 0.000 chr7 132779870 133087090
CHCHD4 207 76 50 28 0 0 0.802 0.295 0.194 0.109 0.000 0.000 chr3 14107077 14129870
CHCHD5 221 82 36 22 0 0 0.857 0.318 0.140 0.085 0.000 0.000 chr2 112579609 112594040
CHCHD6 107 19 110 61 0 0 0.415 0.074 0.426 0.236 0.000 0.000 chr3 126699240 126965420
CHCHD7 191 64 65 39 0 0 0.740 0.248 0.252 0.151 0.000 0.000 chr8 56206789 56223809
CHCT1 160 49 95 53 0 0 0.620 0.190 0.368 0.205 0.000 0.000 chr17 60417489 60436426
CHD1L 208 79 42 23 0 0 0.806 0.306 0.163 0.089 0.000 0.000 chr1 147237684 147300762
CHD1 166 56 80 45 0 0 0.643 0.217 0.310 0.174 0.000 0.000 chr5 98848985 98934007