Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CHD2 152 38 78 51 0 0 0.589 0.147 0.302 0.198 0.000 0.000 chr15 92895324 93032996
view CHD3 182 52 65 44 0 0 0.705 0.202 0.252 0.171 0.000 0.000 chr17 7883789 7917755
view CHD4 186 58 62 41 0 0 0.721 0.225 0.240 0.159 0.000 0.000 chr12 6565082 6612379
view CHD5 159 44 68 40 0 0 0.616 0.171 0.264 0.155 0.000 0.000 chr1 6096787 6185321
view CHD6 161 55 76 39 0 0 0.624 0.213 0.295 0.151 0.000 0.000 chr20 41397083 41623377
view CHD7 117 36 109 56 0 0 0.453 0.140 0.422 0.217 0.000 0.000 chr8 60673740 60873028
view CHD8 129 27 91 59 0 0 0.500 0.105 0.353 0.229 0.000 0.000 chr14 21380199 21461123
view CHD9NB 202 67 50 35 0 0 0.783 0.260 0.194 0.136 0.000 0.000 chr16 53036484 53057897
view CHD9 118 34 85 44 0 0 0.457 0.132 0.329 0.171 0.000 0.000 chr16 53049991 53332497
view CHDH 195 60 42 29 0 0 0.756 0.233 0.163 0.112 0.000 0.000 chr3 53807335 53851419
view CHEK1 191 68 58 30 0 0 0.740 0.264 0.225 0.116 0.000 0.000 chr11 125620163 125662147
view CHEK2 191 61 58 40 0 0 0.740 0.236 0.225 0.155 0.000 0.000 chr22 28682743 28746820
view CHERP 164 33 80 58 0 0 0.636 0.128 0.310 0.225 0.000 0.000 chr19 16512894 16547437
view CHFR 188 59 64 42 0 0 0.729 0.229 0.248 0.163 0.000 0.000 chr12 132827356 132892605
view CHGA 223 80 29 20 0 0 0.864 0.310 0.112 0.078 0.000 0.000 chr14 92918150 92940285
view CHGB 219 80 34 21 1 0 0.849 0.310 0.132 0.081 0.004 0.000 chr20 5906510 5930353
view CHI3L1 233 86 22 18 1 0 0.903 0.333 0.085 0.070 0.004 0.000 chr1 203173931 203191704
view CHI3L2 216 82 39 22 0 0 0.837 0.318 0.151 0.085 0.000 0.000 chr1 111222713 111248440
view CHIA 212 77 39 22 0 0 0.822 0.298 0.151 0.085 0.000 0.000 chr1 111285851 111325563
view CHIC1 40 0 199 95 0 0 0.155 0.000 0.771 0.368 0.000 0.000 chrX 73558197 73692111
view CHIC2 121 25 113 66 0 0 0.469 0.097 0.438 0.256 0.000 0.000 chr4 54004789 54069605
view CHID1 192 60 56 37 0 0 0.744 0.233 0.217 0.143 0.000 0.000 chr11 862859 915810
view CHIT1 241 93 15 10 0 0 0.934 0.360 0.058 0.039 0.000 0.000 chr1 203211079 203234673
view CHKA 137 31 103 62 0 0 0.531 0.120 0.399 0.240 0.000 0.000 chr11 68047859 68126388
view CHKB 207 71 46 31 0 0 0.802 0.275 0.178 0.120 0.000 0.000 chr22 50573963 50587849
view CHL1 144 38 66 41 0 0 0.558 0.147 0.256 0.159 0.000 0.000 chr3 191763 414417
view CHML 225 85 27 17 0 0 0.872 0.329 0.105 0.066 0.000 0.000 chr1 241623851 241645369
view CHMP1A 195 59 50 34 0 0 0.756 0.229 0.194 0.132 0.000 0.000 chr16 89639435 89662708
view CHMP1B 218 76 39 28 0 0 0.845 0.295 0.151 0.109 0.000 0.000 chr18 11846413 11859444
view CHMP2A 209 75 44 25 0 0 0.810 0.291 0.171 0.097 0.000 0.000 chr19 58546566 58560105
view CHMP2B 206 81 42 17 0 0 0.798 0.314 0.163 0.066 0.000 0.000 chr3 87222309 87260556
view CHMP3 167 50 77 49 0 0 0.647 0.194 0.298 0.190 0.000 0.000 chr2 86498430 86568443
view CHMP4A 208 71 50 34 0 0 0.806 0.275 0.194 0.132 0.000 0.000 chr14 24204615 24218488
view CHMP4B 165 46 83 52 0 0 0.640 0.178 0.322 0.202 0.000 0.000 chr20 33806348 33859366
view CHMP4C 203 71 47 29 0 0 0.787 0.275 0.182 0.112 0.000 0.000 chr8 81727448 81764515
view CHMP5 163 60 91 41 0 0 0.632 0.233 0.353 0.159 0.000 0.000 chr9 33260049 33287070
view CHMP6 218 78 33 21 2 1 0.845 0.302 0.128 0.081 0.008 0.004 chr17 80986841 81005133
view CHMP7 218 76 32 23 1 1 0.845 0.295 0.124 0.089 0.004 0.004 chr8 23238637 23266999
view CHM 58 9 175 82 0 0 0.225 0.035 0.678 0.318 0.000 0.000 chrX 85856180 86052558
view CHN1 137 48 93 47 0 0 0.531 0.186 0.360 0.182 0.000 0.000 chr2 174793809 175010381
view CHN2 115 23 70 39 0 0 0.446 0.089 0.271 0.151 0.000 0.000 chr7 29189775 29519328
view CHODL 200 62 47 36 0 0 0.775 0.240 0.182 0.140 0.000 0.000 chr21 18239833 18272370
view CHORDC1 205 72 45 29 1 0 0.795 0.279 0.174 0.112 0.004 0.000 chr11 90195429 90228049
view CHP1 148 36 85 51 0 0 0.574 0.140 0.329 0.198 0.000 0.000 chr15 41226268 41286887
view CHP2 195 55 59 46 0 0 0.756 0.213 0.229 0.178 0.000 0.000 chr16 23750026 23763935
view CHPF2 190 54 64 47 0 0 0.736 0.209 0.248 0.182 0.000 0.000 chr7 151227483 151243822
view CHPF 197 60 56 40 1 1 0.764 0.233 0.217 0.155 0.004 0.004 chr2 219533954 219548809
view CHPT1 200 77 54 25 0 0 0.775 0.298 0.209 0.097 0.000 0.000 chr12 101692640 101734074
view CHRAC1 211 69 44 34 2 1 0.818 0.267 0.171 0.132 0.008 0.004 chr8 140506322 140522154
view CHRDL1 23 0 219 95 0 0 0.089 0.000 0.849 0.368 0.000 0.000 chrX 110668856 110800817