Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CHRDL2 195 62 55 38 0 0 0.756 0.240 0.213 0.147 0.000 0.000 chr11 74691429 74736426
view CHRD 213 65 39 34 0 0 0.826 0.252 0.151 0.132 0.000 0.000 chr3 184375054 184394829
view CHRFAM7A 66 9 110 37 0 0 0.256 0.035 0.426 0.143 0.000 0.000 chr15 30355566 30398540
view CHRM1 209 77 41 24 2 0 0.810 0.298 0.159 0.093 0.008 0.000 chr11 62903679 62926363
view CHRM2 159 49 59 39 0 0 0.616 0.190 0.229 0.151 0.000 0.000 chr7 136863652 137025213
view CHRM3 57 7 102 45 0 0 0.221 0.027 0.395 0.174 0.000 0.000 chr1 239381568 239920450
view CHRM4 153 37 102 66 0 0 0.593 0.143 0.395 0.256 0.000 0.000 chr11 46378789 46396776
view CHRM5 168 53 70 39 0 0 0.651 0.205 0.271 0.151 0.000 0.000 chr15 33963497 34072458
view CHRNA10 224 84 29 16 1 1 0.868 0.326 0.112 0.062 0.004 0.004 chr11 3660587 3676384
view CHRNA1 184 57 69 46 0 0 0.713 0.221 0.267 0.178 0.000 0.000 chr2 174742592 174769472
view CHRNA2 228 80 22 17 1 1 0.884 0.310 0.085 0.066 0.004 0.004 chr8 27454756 27484261
view CHRNA3 204 75 45 25 0 0 0.791 0.291 0.174 0.097 0.000 0.000 chr15 78590309 78625996
view CHRNA4 83 8 106 38 0 0 0.322 0.031 0.411 0.147 0.000 0.000 chr20 63338223 63366349
view CHRNA5 190 67 62 33 0 0 0.736 0.260 0.240 0.128 0.000 0.000 chr15 78560520 78600269
view CHRNA6 174 48 73 50 0 0 0.674 0.186 0.283 0.194 0.000 0.000 chr8 42747620 42773786
view CHRNA7 153 42 56 33 0 0 0.593 0.163 0.217 0.128 0.000 0.000 chr15 32025515 32178018
view CHRNA9 209 71 40 26 0 0 0.810 0.275 0.155 0.101 0.000 0.000 chr4 40330333 40360217
view CHRNB1 183 56 68 42 0 0 0.709 0.217 0.264 0.163 0.000 0.000 chr17 7440061 7462710
view CHRNB2 211 73 43 28 0 0 0.818 0.283 0.167 0.109 0.000 0.000 chr1 154562778 154585013
view CHRNB3 140 30 90 57 0 0 0.543 0.116 0.349 0.221 0.000 0.000 chr8 42692366 42742407
view CHRNB4 207 77 43 22 0 0 0.802 0.298 0.167 0.085 0.000 0.000 chr15 78619111 78646210
view CHRND 218 82 36 20 0 0 0.845 0.318 0.140 0.078 0.000 0.000 chr2 232521160 232541664
view CHRNE 222 80 34 23 0 0 0.860 0.310 0.132 0.089 0.000 0.000 chr17 4892771 4908098
view CHRNG 216 78 37 22 0 0 0.837 0.302 0.143 0.085 0.000 0.000 chr2 232534692 232553115
view CHST10 181 52 69 49 0 0 0.702 0.202 0.267 0.190 0.000 0.000 chr2 100386860 100422668
view CHST11 119 26 62 47 0 0 0.461 0.101 0.240 0.182 0.000 0.000 chr12 104451948 104767014
view CHST12 171 43 64 42 0 0 0.663 0.167 0.248 0.163 0.000 0.000 chr7 2398611 2453484
view CHST13 181 56 68 46 0 0 0.702 0.217 0.264 0.178 0.000 0.000 chr3 126519155 126548291
view CHST14 205 69 49 32 2 2 0.795 0.267 0.190 0.124 0.008 0.008 chr15 40465984 40478158
view CHST15 195 55 48 38 0 0 0.756 0.213 0.186 0.147 0.000 0.000 chr10 124002668 124098598
view CHST1 192 67 61 34 0 0 0.744 0.260 0.236 0.132 0.000 0.000 chr11 45642689 45670622
view CHST2 231 89 25 15 1 0 0.895 0.345 0.097 0.058 0.004 0.000 chr3 143114771 143129014
view CHST3 185 63 64 40 0 0 0.717 0.244 0.248 0.155 0.000 0.000 chr10 71959395 72018558
view CHST4 208 73 45 27 1 1 0.806 0.283 0.174 0.105 0.004 0.004 chr16 71521426 71543748
view CHST5 196 59 58 42 0 0 0.760 0.229 0.225 0.163 0.000 0.000 chr16 75523530 75541108
view CHST6 185 57 57 39 0 0 0.717 0.221 0.221 0.151 0.000 0.000 chr16 75467052 75500441
view CHST7 90 27 164 75 0 0 0.349 0.105 0.636 0.291 0.000 0.000 chrX 46568765 46603496
view CHST8 126 19 72 48 0 0 0.488 0.074 0.279 0.186 0.000 0.000 chr19 33616953 33778506
view CHST9 130 34 72 45 0 0 0.504 0.132 0.279 0.174 0.000 0.000 chr18 26901481 27190308
view CHSY1 210 74 32 20 0 0 0.814 0.287 0.124 0.078 0.000 0.000 chr15 101170727 101257048
view CHSY3 138 41 76 45 0 0 0.535 0.159 0.295 0.174 0.000 0.000 chr5 129899465 130191634
view CHTF18 213 69 36 27 0 0 0.826 0.267 0.140 0.105 0.000 0.000 chr16 783620 803074
view CHTF8 181 47 69 50 0 0 0.702 0.182 0.267 0.194 0.000 0.000 chr16 69113010 69137588
view CHTOP 185 54 69 47 0 0 0.717 0.209 0.267 0.182 0.000 0.000 chr1 153629066 153651306
view CHUK 200 75 49 24 0 0 0.775 0.291 0.190 0.093 0.000 0.000 chr10 100183300 100234596
view CHURC1 195 67 58 33 0 0 0.756 0.260 0.225 0.128 0.000 0.000 chr14 64909455 64940368
view CIAO1 201 77 56 27 0 0 0.779 0.298 0.217 0.105 0.000 0.000 chr2 96261225 96279173
view CIAO2A 168 50 81 47 0 0 0.651 0.194 0.314 0.182 0.000 0.000 chr15 64067565 64098838
view CIAO2B 197 67 59 36 0 0 0.764 0.260 0.229 0.140 0.000 0.000 chr16 66927065 66939402
view CIAO3 198 56 47 36 0 0 0.767 0.217 0.182 0.140 0.000 0.000 chr16 724765 745997