Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CIAPIN1 194 67 53 30 0 0 0.752 0.260 0.205 0.116 0.000 0.000 chr16 57423187 57452385
CIART 207 73 46 29 0 0 0.802 0.283 0.178 0.112 0.000 0.000 chr1 150277554 150292093
CIB1 229 88 28 17 1 0 0.888 0.341 0.109 0.066 0.004 0.000 chr15 90224975 90238941
CIB2 194 62 50 30 0 0 0.752 0.240 0.194 0.116 0.000 0.000 chr15 78099606 78136445
CIB3 188 56 62 43 1 1 0.729 0.217 0.240 0.167 0.004 0.004 chr19 16156368 16178525
CIB4 171 52 70 43 0 0 0.663 0.202 0.271 0.167 0.000 0.000 chr2 26576205 26646366
CIBAR1 186 61 66 40 0 0 0.721 0.236 0.256 0.155 0.000 0.000 chr8 93695550 93736527
CIBAR2 217 75 34 23 0 0 0.841 0.291 0.132 0.089 0.000 0.000 chr16 85093358 85117472
CIC 97 12 130 70 0 0 0.376 0.047 0.504 0.271 0.000 0.000 chr19 42264252 42300796
CIDEA 223 78 26 19 1 1 0.864 0.302 0.101 0.074 0.004 0.004 chr18 12249361 12282595
CIDEB 206 72 47 29 1 0 0.798 0.279 0.182 0.112 0.004 0.000 chr14 24300187 24312977
CIDEC 204 62 47 38 0 0 0.791 0.240 0.182 0.147 0.000 0.000 chr3 9861714 9885253
CIITA 195 68 39 24 0 0 0.756 0.264 0.151 0.093 0.000 0.000 chr16 10872202 10941394
CILK1 121 40 111 52 0 0 0.469 0.155 0.430 0.202 0.000 0.000 chr6 52996303 53066824
CILP2 175 44 72 52 1 0 0.678 0.171 0.279 0.202 0.004 0.000 chr19 19533265 19551659
CILP 165 45 82 54 0 0 0.640 0.174 0.318 0.209 0.000 0.000 chr15 65189760 65216473
CINP 209 72 45 29 0 0 0.810 0.279 0.174 0.112 0.000 0.000 chr14 102343282 102367890
CIP2A 185 54 61 42 0 0 0.717 0.209 0.236 0.163 0.000 0.000 chr3 108544864 108594438
CIPC 212 76 44 27 0 0 0.822 0.295 0.171 0.105 0.000 0.000 chr14 77093258 77122287
CIR1 173 53 67 40 0 0 0.671 0.205 0.260 0.155 0.000 0.000 chr2 174343022 174400712
CIRBP 139 17 109 80 0 0 0.539 0.066 0.422 0.310 0.000 0.000 chr19 1264332 1279810
CIROP 224 87 31 17 2 1 0.868 0.337 0.120 0.066 0.008 0.004 chr14 23094062 23109989
CISD1 192 63 62 39 0 0 0.744 0.244 0.240 0.151 0.000 0.000 chr10 58264162 58294586
CISD2 176 54 76 45 0 0 0.682 0.209 0.295 0.174 0.000 0.000 chr4 102863992 102897807
CISD3 205 71 51 32 0 0 0.795 0.275 0.198 0.124 0.000 0.000 chr17 38725341 38740605
CISH 179 66 75 37 2 0 0.694 0.256 0.291 0.143 0.008 0.000 chr3 50601489 50616774
CITED1 87 29 167 73 1 0 0.337 0.112 0.647 0.283 0.004 0.000 chrX 72296646 72310914
CITED2 160 34 95 68 0 0 0.620 0.132 0.368 0.264 0.000 0.000 chr6 139366807 139379648
CITED4 219 83 33 19 3 1 0.849 0.322 0.128 0.074 0.012 0.004 chr1 40856054 40867363
CIT 117 33 97 52 0 0 0.453 0.128 0.376 0.202 0.000 0.000 chr12 119680791 119882320
CIZ1 189 66 61 33 0 0 0.733 0.256 0.236 0.128 0.000 0.000 chr9 128161065 128196572
CKAP2L 149 42 99 56 0 0 0.578 0.163 0.384 0.217 0.000 0.000 chr2 112731349 112769609
CKAP2 202 65 46 30 0 0 0.783 0.252 0.178 0.116 0.000 0.000 chr13 52450478 52481627
CKAP4 208 68 46 34 0 0 0.806 0.264 0.178 0.132 0.000 0.000 chr12 106232881 106253020
CKAP5 146 47 84 42 0 0 0.566 0.182 0.326 0.163 0.000 0.000 chr11 46738048 46851280
CKB 213 72 42 30 0 0 0.826 0.279 0.163 0.116 0.000 0.000 chr14 103514667 103527830
CKLF 195 67 60 35 0 0 0.756 0.260 0.233 0.136 0.000 0.000 chr16 66547576 66571068
CKMT1A 196 72 55 28 1 0 0.760 0.279 0.213 0.109 0.004 0.000 chr15 43688859 43704222
CKMT1B 174 54 72 42 1 0 0.674 0.209 0.279 0.163 0.004 0.000 chr15 43589027 43604406
CKMT2 177 57 72 43 0 0 0.686 0.221 0.279 0.167 0.000 0.000 chr5 81228322 81271398
CKM 195 58 54 39 0 0 0.756 0.225 0.209 0.151 0.000 0.000 chr19 45301413 45327875
CKS1B 145 31 106 68 0 0 0.562 0.120 0.411 0.264 0.000 0.000 chr1 154969681 154984251
CKS2 219 82 36 22 3 1 0.849 0.318 0.140 0.085 0.012 0.004 chr9 89306195 89321703
CLASP1 106 22 114 65 0 0 0.411 0.085 0.442 0.252 0.000 0.000 chr2 121332776 121654462
CLASP2 138 38 90 56 0 0 0.535 0.147 0.349 0.217 0.000 0.000 chr3 33491245 33723254
CLASRP 181 51 61 44 0 0 0.702 0.198 0.236 0.171 0.000 0.000 chr19 45034045 45075956
CLBA1 221 84 35 19 0 0 0.857 0.326 0.136 0.074 0.000 0.000 chr14 104980788 105000516
CLCA1 219 75 33 25 0 0 0.849 0.291 0.128 0.097 0.000 0.000 chr1 86463927 86505259
CLCA2 206 78 45 25 0 0 0.798 0.302 0.174 0.097 0.000 0.000 chr1 86419171 86461553
CLCA4 166 55 75 39 1 1 0.643 0.213 0.291 0.151 0.004 0.004 chr1 86542078 86585754