Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CNTN1 115 31 87 44 0 0 0.446 0.120 0.337 0.171 0.000 0.000 chr12 40687439 41077415
view CNTN2 189 60 55 37 0 0 0.733 0.233 0.213 0.143 0.000 0.000 chr1 205038212 205083289
view CNTN3 86 16 76 48 0 0 0.333 0.062 0.295 0.186 0.000 0.000 chr3 74257568 74619659
view CNTN4 58 1 79 48 0 0 0.225 0.004 0.306 0.186 0.000 0.000 chr3 2093866 3062959
view CNTN5 33 4 88 40 0 0 0.128 0.016 0.341 0.155 0.000 0.000 chr11 99015949 100363885
view CNTN6 115 18 58 39 0 0 0.446 0.070 0.225 0.151 0.000 0.000 chr3 1088024 1409217
view CNTNAP1 181 55 71 45 0 0 0.702 0.213 0.275 0.174 0.000 0.000 chr17 42677531 42704993
view CNTNAP2 20 0 103 48 0 0 0.078 0.000 0.399 0.186 0.000 0.000 chr7 146111801 148425998
view CNTNAP3B 53 8 134 53 0 0 0.205 0.031 0.519 0.205 0.000 0.000 chr9 41885536 42134426
view CNTNAP3 1 0 11 0 0 0 0.004 0.000 0.043 0.000 0.000 0.000 chr9 39059710 39293167
view CNTNAP4 136 37 55 37 0 0 0.527 0.143 0.213 0.143 0.000 0.000 chr16 76272401 76565757
view CNTNAP5 31 1 94 53 0 0 0.120 0.004 0.364 0.205 0.000 0.000 chr2 124020287 124926219
view CNTRL 164 55 78 42 0 0 0.636 0.213 0.302 0.163 0.000 0.000 chr9 121069955 121182610
view CNTROB 200 66 54 36 0 0 0.775 0.256 0.209 0.140 0.000 0.000 chr17 7927206 7954920
view COA1 191 65 56 35 0 0 0.740 0.252 0.217 0.136 0.000 0.000 chr7 43634257 43734523
view COA3 154 49 94 48 2 1 0.597 0.190 0.364 0.186 0.008 0.004 chr17 42792625 42803704
view COA4 196 66 60 38 2 1 0.760 0.256 0.233 0.147 0.008 0.004 chr11 73867667 73881846
view COA5 209 75 48 30 0 0 0.810 0.291 0.186 0.116 0.000 0.000 chr2 98594314 98613512
view COA6 202 69 52 33 0 0 0.783 0.267 0.202 0.128 0.000 0.000 chr1 234368456 234390080
view COA7 208 72 47 30 0 0 0.806 0.279 0.182 0.116 0.000 0.000 chr1 52679449 52703347
view COA8 190 61 56 35 0 0 0.736 0.236 0.217 0.136 0.000 0.000 chr14 103557960 103595896
view COASY 196 61 62 44 0 0 0.760 0.236 0.240 0.171 0.000 0.000 chr17 42557148 42571277
view COBLL1 105 15 98 56 0 0 0.407 0.058 0.380 0.217 0.000 0.000 chr2 164675188 164846823
view COBL 114 33 77 41 0 0 0.442 0.128 0.298 0.159 0.000 0.000 chr7 51011212 51321809
view COCH 238 96 18 8 0 0 0.922 0.372 0.070 0.031 0.000 0.000 chr14 30869559 30895618
view COG1 213 69 42 33 0 0 0.826 0.267 0.163 0.128 0.000 0.000 chr17 73188055 73213507
view COG2 202 71 42 24 0 0 0.783 0.275 0.163 0.093 0.000 0.000 chr1 230637481 230698982
view COG3 170 53 74 45 0 0 0.659 0.205 0.287 0.174 0.000 0.000 chr13 45459939 45541701
view COG4 176 56 63 35 0 0 0.682 0.217 0.244 0.136 0.000 0.000 chr16 70475571 70528554
view COG5 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr7 107196372 107568920
view COG6 184 62 57 37 0 0 0.713 0.240 0.221 0.143 0.000 0.000 chr13 39650662 39757628
view COG7 135 37 103 56 0 0 0.523 0.143 0.399 0.217 0.000 0.000 chr16 23383493 23458189
view COG8 179 50 73 52 0 0 0.694 0.194 0.283 0.202 0.000 0.000 chr16 69321428 69344564
view COIL 208 67 44 32 0 0 0.806 0.260 0.171 0.124 0.000 0.000 chr17 56933199 56966050
view COL10A1 210 77 46 26 0 0 0.814 0.298 0.178 0.101 0.000 0.000 chr6 116113909 116131132
view COL11A1 91 14 124 71 0 0 0.353 0.054 0.481 0.275 0.000 0.000 chr1 102871473 103113522
view COL11A2 183 52 65 44 0 0 0.709 0.202 0.252 0.171 0.000 0.000 chr6 33157694 33197467
view COL12A1 102 26 103 52 0 0 0.395 0.101 0.399 0.202 0.000 0.000 chr6 75079326 75211053
view COL13A1 161 46 45 27 0 0 0.624 0.178 0.174 0.105 0.000 0.000 chr10 69796906 69964144
view COL14A1 108 28 75 40 0 0 0.419 0.109 0.291 0.155 0.000 0.000 chr8 120120102 120378573
view COL15A1 154 47 69 41 0 0 0.597 0.182 0.267 0.159 0.000 0.000 chr9 98938907 99075787
view COL16A1 170 44 68 47 0 0 0.659 0.171 0.264 0.182 0.000 0.000 chr1 31647263 31709017
view COL17A1 167 58 66 36 0 0 0.647 0.225 0.256 0.140 0.000 0.000 chr10 104026286 104090880
view COL18A1 145 31 70 43 0 0 0.562 0.120 0.271 0.167 0.000 0.000 chr21 45400165 45518720
view COL19A1 90 21 86 51 0 0 0.349 0.081 0.333 0.198 0.000 0.000 chr6 69861556 70217468
view COL1A1 223 80 26 17 0 0 0.864 0.310 0.101 0.066 0.000 0.000 chr17 50179101 50206631
view COL1A2 218 79 34 20 0 0 0.845 0.306 0.132 0.078 0.000 0.000 chr7 94389895 94436227
view COL20A1 144 29 72 45 0 0 0.558 0.112 0.279 0.174 0.000 0.000 chr20 63288186 63339806
view COL21A1 131 36 88 47 0 0 0.508 0.140 0.341 0.182 0.000 0.000 chr6 56051590 56252580
view COL22A1 78 6 99 62 0 0 0.302 0.023 0.384 0.240 0.000 0.000 chr8 138583235 138919041