Joint Open Genome and Omics Platform (JoGo)

Genic Haplotype Summary

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Chr

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View	Genename	ALL BOTH # of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database	JPT BOTH # of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database	ALL SINGLE # of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	JPT SINGLE # of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	ALL MULTI # of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database	ALL BOTH # of samples with two haploids were completely assembled/# of total samples	JPT BOTH # of JPT samples with two haploids were completely assembled/# of total JPT samples	ALL SINGLE # of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	JPT SINGLE # of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	ALL MULTI # of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database	Chr	Start	End
view	CREBRF	145	33	92	60	0	0.562	0.128	0.357	0.233	0.000	chr5	173051352	173144284
view	CREBZF	195	69	63	36	0	0.756	0.267	0.244	0.140	0.000	chr11	85652990	85670129
view	CREG1	208	68	44	31	0	0.806	0.264	0.171	0.120	0.000	chr1	167536013	167558762
view	CREG2	193	63	51	33	0	0.748	0.244	0.198	0.128	0.000	chr2	101340550	101392503
view	CRELD1	200	64	54	37	0	0.775	0.248	0.209	0.143	0.000	chr3	9928834	9950406
view	CRELD2	161	40	83	53	0	0.624	0.155	0.322	0.205	0.000	chr22	49913634	49932537
view	CREM	146	39	89	55	0	0.566	0.151	0.345	0.213	0.000	chr10	35121846	35217953
view	CRHBP	207	70	43	29	1	0.802	0.271	0.167	0.112	0.004	chr5	76948045	76974471
view	CRHR1	150	37	94	57	0	0.581	0.143	0.364	0.221	0.000	chr17	45779320	45840828
view	CRHR2	199	64	52	36	0	0.771	0.248	0.202	0.140	0.000	chr7	30646942	30687456
view	CRH	186	63	69	39	0	0.721	0.244	0.267	0.151	0.000	chr8	66171376	66183464
view	CRIM1	161	45	61	41	0	0.624	0.174	0.236	0.159	0.000	chr2	36350778	36556135
view	CRIP1	191	57	54	36	1	0.740	0.221	0.209	0.140	0.004	chr14	105481886	105493947
view	CRIP2	157	41	81	51	0	0.609	0.159	0.314	0.198	0.000	chr14	105469821	105485162
view	CRIP3	187	60	69	44	0	0.725	0.233	0.267	0.171	0.000	chr6	43300472	43313826
view	CRIPT	219	83	35	20	1	0.849	0.322	0.136	0.078	0.004	chr2	46612215	46635176
view	CRISP1	188	60	64	40	0	0.729	0.233	0.248	0.155	0.000	chr6	49829257	49871535
view	CRISP2	204	69	48	30	0	0.791	0.267	0.186	0.116	0.000	chr6	49687359	49718543
view	CRISP3	199	65	55	38	0	0.771	0.252	0.213	0.147	0.000	chr6	49722376	49749388
view	CRISPLD1	183	55	63	41	0	0.709	0.213	0.244	0.159	0.000	chr8	74979505	75039558
view	CRISPLD2	189	56	46	32	0	0.733	0.217	0.178	0.124	0.000	chr16	84814985	84914508
view	CRKL	184	60	50	28	0	0.713	0.233	0.194	0.109	0.000	chr22	20912407	20958747
view	CRK	201	61	42	30	0	0.779	0.236	0.163	0.116	0.000	chr17	1415693	1461232
view	CRLF1	203	72	50	30	0	0.787	0.279	0.194	0.116	0.000	chr19	18588237	18611799
view	CRLF2	119	29	101	42	0	0.461	0.112	0.391	0.163	0.000	chrX	1185490	1217649
view	CRLF3	161	46	85	54	0	0.624	0.178	0.329	0.209	0.000	chr17	30777684	30829692
view	CRLS1	182	59	62	38	0	0.705	0.229	0.240	0.147	0.000	chr20	6001123	6045053
view	CRMP1	156	39	75	48	0	0.605	0.151	0.291	0.186	0.000	chr4	5815764	5898086
view	CRNKL1	213	88	43	17	0	0.826	0.341	0.167	0.066	0.000	chr20	20029368	20057466
view	CRNN	195	74	61	30	1	0.756	0.287	0.236	0.116	0.004	chr1	152404243	152419263
view	CROCC2	174	48	51	32	0	0.674	0.186	0.198	0.124	0.000	chr2	240901336	240998311
view	CROCC	115	31	98	50	0	0.446	0.120	0.380	0.194	0.000	chr1	16916931	16977964
view	CROT	140	40	95	50	0	0.543	0.155	0.368	0.194	0.000	chr7	87340664	87404794
view	CRPPA	144	54	65	28	0	0.558	0.209	0.252	0.109	0.000	chr7	16082525	16426538
view	CRP	216	78	42	27	0	0.837	0.302	0.163	0.105	0.000	chr1	159707289	159719589
view	CRTAC1	101	15	107	69	0	0.391	0.058	0.415	0.267	0.000	chr10	97860000	98035621
view	CRTAM	213	75	37	25	0	0.826	0.291	0.143	0.097	0.000	chr11	122833500	122877643
view	CRTAP	203	68	44	28	0	0.787	0.264	0.171	0.109	0.000	chr3	33109014	33152773
view	CRTC1	136	25	85	60	0	0.527	0.097	0.329	0.233	0.000	chr19	18678680	18787333
view	CRTC2	184	65	71	38	1	0.713	0.252	0.275	0.147	0.004	chr1	153942675	153963612
view	CRTC3	137	35	81	41	0	0.531	0.136	0.314	0.159	0.000	chr15	90524923	90650345
view	CRX	171	39	70	51	0	0.663	0.151	0.271	0.198	0.000	chr19	47816937	47848324
view	CRY1	159	54	74	36	0	0.616	0.209	0.287	0.140	0.000	chr12	106986364	107098549
view	CRY2	183	57	67	42	0	0.709	0.221	0.260	0.163	0.000	chr11	45842475	45888244
view	CRYAA	20	1	78	15	0	0.078	0.004	0.302	0.058	0.000	chr21	43164008	43177805
view	CRYAB	198	68	57	34	0	0.767	0.264	0.221	0.132	0.000	chr11	111903564	111916770
view	CRYBA1	196	65	59	37	0	0.760	0.252	0.229	0.143	0.000	chr17	29241859	29259494
view	CRYBA2	194	62	53	33	1	0.752	0.240	0.205	0.128	0.004	chr2	218985190	218998422
view	CRYBA4	200	72	55	30	0	0.775	0.279	0.213	0.116	0.000	chr22	26616963	26635669
view	CRYBB1	212	77	43	25	0	0.822	0.298	0.167	0.097	0.000	chr22	26594278	26623027

Genic Haplotype Summary

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