Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CPOX 223 76 32 26 0 0 0.864 0.295 0.124 0.101 0.000 0.000 chr3 98574446 98598611
view CPO 210 73 41 26 0 0 0.814 0.283 0.159 0.101 0.000 0.000 chr2 206934518 206974474
view CPPED1 144 40 61 32 0 0 0.558 0.155 0.236 0.124 0.000 0.000 chr16 12654799 12808887
view CPQ 62 15 102 49 0 0 0.240 0.058 0.395 0.190 0.000 0.000 chr8 96640242 97148501
view CPS1 169 57 57 33 0 0 0.655 0.221 0.221 0.128 0.000 0.000 chr2 210551599 210684107
view CPSF1 174 45 65 44 0 0 0.674 0.174 0.252 0.171 0.000 0.000 chr8 144388231 144414335
view CPSF2 193 73 57 27 0 0 0.748 0.283 0.221 0.105 0.000 0.000 chr14 92116969 92177145
view CPSF3 114 9 122 81 0 0 0.442 0.035 0.473 0.314 0.000 0.000 chr2 9418654 9478101
view CPSF4L 198 66 51 32 0 0 0.767 0.256 0.198 0.124 0.000 0.000 chr17 73243449 73266880
view CPSF4 181 58 67 39 0 0 0.702 0.225 0.260 0.151 0.000 0.000 chr7 99433943 99462373
view CPSF6 195 72 49 25 0 0 0.756 0.279 0.190 0.097 0.000 0.000 chr12 69234569 69279358
view CPSF7 94 7 150 87 0 0 0.364 0.027 0.581 0.337 0.000 0.000 chr11 61397729 61434975
view CPT1A 117 24 93 59 0 0 0.453 0.093 0.360 0.229 0.000 0.000 chr11 68749883 68846916
view CPT1B 206 71 48 32 0 0 0.798 0.275 0.186 0.124 0.000 0.000 chr22 50563861 50583427
view CPT1C 174 42 67 46 0 0 0.674 0.163 0.260 0.178 0.000 0.000 chr19 49686116 49718731
view CPT2 192 72 58 32 0 0 0.744 0.279 0.225 0.124 0.000 0.000 chr1 53191824 53219197
view CPTP 188 55 63 43 0 0 0.729 0.213 0.244 0.167 0.000 0.000 chr1 1319802 1333896
view CPVL 140 37 64 37 0 0 0.543 0.143 0.248 0.143 0.000 0.000 chr7 28990235 29151537
view CPXCR1 88 27 164 74 1 0 0.341 0.105 0.636 0.287 0.004 0.000 chrX 88742225 88759781
view CPXM1 226 79 31 25 1 1 0.876 0.306 0.120 0.097 0.004 0.004 chr20 2789074 2805627
view CPXM2 143 34 67 45 0 0 0.554 0.132 0.260 0.174 0.000 0.000 chr10 123740639 123896807
view CPZ 220 71 32 28 0 0 0.853 0.275 0.124 0.109 0.000 0.000 chr4 8587765 8624752
view CP 187 60 49 27 0 0 0.725 0.233 0.190 0.105 0.000 0.000 chr3 149167497 149226829
view CR1L 172 54 62 34 0 0 0.667 0.209 0.240 0.132 0.000 0.000 chr1 207640133 207728703
view CR1 179 58 58 39 0 0 0.694 0.225 0.225 0.151 0.000 0.000 chr1 207491157 207646765
view CR2 188 72 59 28 0 0 0.729 0.279 0.229 0.109 0.000 0.000 chr1 207449328 207494892
view CRABP1 229 86 24 16 2 0 0.888 0.333 0.093 0.062 0.008 0.000 chr15 78335353 78353225
view CRABP2 217 75 37 26 0 0 0.841 0.291 0.143 0.101 0.000 0.000 chr1 156694606 156710583
view CRACDL 157 50 67 43 0 0 0.609 0.194 0.260 0.167 0.000 0.000 chr2 98788846 98941225
view CRACD 124 25 69 43 0 0 0.481 0.097 0.267 0.167 0.000 0.000 chr4 56044098 56335609
view CRACR2A 159 46 57 41 0 0 0.616 0.178 0.221 0.159 0.000 0.000 chr12 3610328 3758109
view CRACR2B 223 76 26 22 3 1 0.864 0.295 0.101 0.085 0.012 0.004 chr11 822919 836986
view CRADD 123 37 86 42 0 0 0.477 0.143 0.333 0.163 0.000 0.000 chr12 93672375 93855756
view CRAMP1 165 57 78 42 0 0 0.640 0.221 0.302 0.163 0.000 0.000 chr16 1607360 1682908
view CRAT 209 70 45 31 0 0 0.810 0.271 0.174 0.120 0.000 0.000 chr9 129089794 129115793
view CRB1 92 17 116 63 0 0 0.357 0.066 0.450 0.244 0.000 0.000 chr1 197263252 197483455
view CRB2 215 73 37 27 0 0 0.833 0.283 0.143 0.105 0.000 0.000 chr9 123351197 123383753
view CRB3 194 54 60 47 0 0 0.752 0.209 0.233 0.182 0.000 0.000 chr19 6459271 6472221
view CRBN 187 58 59 38 0 0 0.725 0.225 0.229 0.147 0.000 0.000 chr3 3145011 3184691
view CRCP 189 66 58 34 0 0 0.733 0.256 0.225 0.132 0.000 0.000 chr7 66109847 66159568
view CRCT1 215 76 39 26 2 1 0.833 0.295 0.151 0.101 0.008 0.004 chr1 152509482 152521008
view CREB1 153 37 89 57 0 0 0.593 0.143 0.345 0.221 0.000 0.000 chr2 207524962 207610988
view CREB3L1 151 37 89 56 0 0 0.585 0.143 0.345 0.217 0.000 0.000 chr11 46272662 46326409
view CREB3L2 143 34 71 46 0 0 0.554 0.132 0.275 0.178 0.000 0.000 chr7 137869979 138007086
view CREB3L3 201 61 48 36 1 1 0.779 0.236 0.186 0.140 0.004 0.004 chr19 4148631 4178054
view CREB3L4 196 71 59 34 0 0 0.760 0.275 0.229 0.132 0.000 0.000 chr1 153962902 153979359
view CREB3 217 86 40 18 0 0 0.841 0.333 0.155 0.070 0.000 0.000 chr9 35727666 35741999
view CREB5 98 13 96 64 0 0 0.380 0.050 0.372 0.248 0.000 0.000 chr7 28407518 28830894
view CREBBP 142 44 74 42 0 0 0.550 0.171 0.287 0.163 0.000 0.000 chr16 3720054 3885713
view CREBL2 185 62 69 40 0 0 0.717 0.240 0.267 0.155 0.000 0.000 chr12 12606876 12650108