Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view COX5B 172 48 81 52 0 0 0.667 0.186 0.314 0.202 0.000 0.000 chr2 97641062 97653383
view COX6A1 212 71 43 32 0 0 0.822 0.275 0.167 0.124 0.000 0.000 chr12 120433113 120445730
view COX6A2 205 76 53 29 0 0 0.795 0.295 0.205 0.112 0.000 0.000 chr16 31422731 31433360
view COX6B1 219 75 38 29 0 0 0.849 0.291 0.147 0.112 0.000 0.000 chr19 35643323 35663782
view COX6B2 194 63 58 36 0 0 0.752 0.244 0.225 0.140 0.000 0.000 chr19 55344704 55359719
view COX6C 177 51 68 43 1 0 0.686 0.198 0.264 0.167 0.004 0.000 chr8 99872865 99898707
view COX7A1 232 81 23 21 0 0 0.899 0.314 0.089 0.081 0.000 0.000 chr19 36145922 36157447
view COX7A2L 202 69 54 35 1 0 0.783 0.267 0.209 0.136 0.004 0.000 chr2 42344338 42366217
view COX7A2 190 71 66 33 1 1 0.736 0.275 0.256 0.128 0.004 0.004 chr6 75232787 75248801
view COX7B2 149 50 72 39 0 0 0.578 0.194 0.279 0.151 0.000 0.000 chr4 46729827 46914245
view COX7B 82 24 173 80 0 0 0.318 0.093 0.671 0.310 0.000 0.000 chrX 77894468 77912376
view COX7C 205 69 50 34 0 0 0.795 0.267 0.194 0.132 0.000 0.000 chr5 86612941 86625962
view COX8A 167 43 87 59 0 0 0.647 0.167 0.337 0.229 0.000 0.000 chr11 63969620 63981543
view COX8C 213 79 42 24 1 0 0.826 0.306 0.163 0.093 0.004 0.000 chr14 93342182 93353356
view CPA1 216 80 36 24 1 0 0.837 0.310 0.140 0.093 0.004 0.000 chr7 130375494 130393108
view CPA2 199 66 47 28 0 0 0.771 0.256 0.182 0.109 0.000 0.000 chr7 130261863 130294798
view CPA3 199 64 50 35 1 1 0.771 0.248 0.194 0.136 0.004 0.004 chr3 148860296 148902203
view CPA4 200 68 47 30 0 0 0.775 0.264 0.182 0.116 0.000 0.000 chr7 130288161 130329180
view CPA5 205 74 46 26 0 0 0.795 0.287 0.178 0.101 0.000 0.000 chr7 130339816 130373730
view CPA6 71 13 105 56 0 0 0.275 0.050 0.407 0.217 0.000 0.000 chr8 67417038 67751360
view CPAMD8 138 28 62 38 0 0 0.535 0.109 0.240 0.147 0.000 0.000 chr19 16887951 17031810
view CPB1 227 79 30 25 0 0 0.880 0.306 0.116 0.097 0.000 0.000 chr3 148822811 148865187
view CPB2 164 53 74 38 0 0 0.636 0.205 0.287 0.147 0.000 0.000 chr13 46048186 46110033
view CPD 147 38 92 54 0 0 0.570 0.147 0.357 0.209 0.000 0.000 chr17 30373927 30474989
view CPEB1 176 57 62 36 0 0 0.682 0.221 0.240 0.140 0.000 0.000 chr15 82538201 82652363
view CPEB2 143 38 96 59 0 0 0.554 0.147 0.372 0.229 0.000 0.000 chr4 14997481 15075151
view CPEB3 138 35 83 50 0 0 0.535 0.136 0.322 0.194 0.000 0.000 chr10 92041692 92296078
view CPEB4 185 60 60 34 0 0 0.717 0.233 0.233 0.132 0.000 0.000 chr5 173883349 173966980
view CPED1 69 5 114 65 0 0 0.267 0.019 0.442 0.252 0.000 0.000 chr7 120983711 121302442
view CPE 165 51 61 37 0 0 0.640 0.198 0.236 0.143 0.000 0.000 chr4 165374008 165503547
view CPHXL2 195 66 59 38 1 0 0.756 0.256 0.229 0.147 0.004 0.000 chr16 75655227 75682009
view CPHXL 193 67 57 32 0 0 0.748 0.260 0.221 0.124 0.000 0.000 chr16 75709131 75731490
view CPLANE1 133 39 109 59 0 0 0.516 0.151 0.422 0.229 0.000 0.000 chr5 37101235 37254376
view CPLANE2 189 54 68 50 1 1 0.733 0.209 0.264 0.194 0.004 0.004 chr1 16226692 16242183
view CPLX1 207 65 41 32 0 0 0.802 0.252 0.159 0.124 0.000 0.000 chr4 779957 831129
view CPLX2 188 61 62 38 1 0 0.729 0.236 0.240 0.147 0.004 0.000 chr5 175866578 175889021
view CPLX3 220 85 34 17 1 0 0.853 0.329 0.132 0.066 0.004 0.000 chr15 74821627 74836802
view CPLX4 208 79 42 22 0 0 0.806 0.306 0.163 0.085 0.000 0.000 chr18 59290402 59323649
view CPM 169 50 61 36 0 0 0.655 0.194 0.236 0.140 0.000 0.000 chr12 68846175 68938171
view CPN1 173 55 64 33 0 0 0.671 0.213 0.248 0.128 0.000 0.000 chr10 100037193 100086869
view CPN2 219 74 35 27 0 0 0.849 0.287 0.136 0.105 0.000 0.000 chr3 194334768 194356328
view CPNE1 135 34 112 66 0 0 0.523 0.132 0.434 0.256 0.000 0.000 chr20 35621044 35669900
view CPNE2 180 59 59 34 0 0 0.698 0.229 0.229 0.132 0.000 0.000 chr16 57087583 57153369
view CPNE3 169 55 72 38 0 0 0.655 0.213 0.279 0.147 0.000 0.000 chr8 86509435 86566498
view CPNE4 46 10 86 29 0 0 0.178 0.039 0.333 0.112 0.000 0.000 chr3 131528569 132040014
view CPNE5 189 64 45 26 0 0 0.733 0.248 0.174 0.101 0.000 0.000 chr6 36735775 36844444
view CPNE6 219 81 37 22 0 0 0.849 0.314 0.143 0.085 0.000 0.000 chr14 24066562 24083087
view CPNE7 173 47 65 40 0 0 0.671 0.182 0.252 0.155 0.000 0.000 chr16 89570758 89602246
view CPNE8 170 54 60 30 0 0 0.659 0.209 0.233 0.116 0.000 0.000 chr12 38647203 38910591
view CPNE9 219 77 32 22 0 0 0.849 0.298 0.124 0.085 0.000 0.000 chr3 9698833 9734908