Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
COPB1 192 67 57 32 0 0 0.744 0.260 0.221 0.124 0.000 0.000 chr11 14452512 14504811
COPB2 131 25 112 68 0 0 0.508 0.097 0.434 0.264 0.000 0.000 chr3 139352406 139394647
COPE 164 44 78 51 0 0 0.636 0.171 0.302 0.198 0.000 0.000 chr19 18894514 18924387
COPG1 162 39 78 52 0 0 0.628 0.151 0.302 0.202 0.000 0.000 chr3 129244606 129282773
COPG2 162 43 86 55 0 0 0.628 0.167 0.333 0.213 0.000 0.000 chr7 130501238 130673748
COPRS 185 55 68 46 0 0 0.717 0.213 0.264 0.178 0.000 0.000 chr17 31846871 31864244
COPS2 198 69 53 31 0 0 0.767 0.267 0.205 0.120 0.000 0.000 chr15 49117727 49160599
COPS3 175 51 69 43 0 0 0.678 0.198 0.267 0.167 0.000 0.000 chr17 17241616 17286246
COPS4 185 73 66 27 0 0 0.717 0.283 0.256 0.105 0.000 0.000 chr4 83030183 83080818
COPS5 145 35 89 53 0 0 0.562 0.136 0.345 0.205 0.000 0.000 chr8 67038079 67067133
COPS6 210 71 45 32 0 0 0.814 0.275 0.174 0.124 0.000 0.000 chr7 100083969 100097187
COPS7A 236 89 22 16 0 0 0.915 0.345 0.085 0.062 0.000 0.000 chr12 6719046 6736865
COPS7B 173 47 72 50 0 0 0.671 0.182 0.279 0.194 0.000 0.000 chr2 231781445 231814253
COPS8 173 49 77 50 0 0 0.671 0.190 0.298 0.194 0.000 0.000 chr2 237080889 237105474
COPS9 220 80 36 23 0 0 0.853 0.310 0.140 0.089 0.000 0.000 chr2 240125828 240141305
COPZ1 183 59 61 35 0 0 0.709 0.229 0.236 0.136 0.000 0.000 chr12 54320131 54356846
COPZ2 197 62 54 37 1 0 0.764 0.240 0.209 0.143 0.004 0.000 chr17 48021167 48042797
COQ10A 165 43 78 53 1 0 0.640 0.167 0.302 0.205 0.004 0.000 chr12 56261942 56275966
COQ10B 194 69 59 31 0 0 0.752 0.267 0.229 0.120 0.000 0.000 chr2 197448552 197480310
COQ2 171 47 82 56 0 0 0.663 0.182 0.318 0.217 0.000 0.000 chr4 83258824 83289798
COQ3 216 80 38 22 0 0 0.837 0.310 0.147 0.085 0.000 0.000 chr6 99364401 99399195
COQ4 186 71 69 32 0 0 0.721 0.275 0.267 0.124 0.000 0.000 chr9 128317839 128339072
COQ5 193 57 59 45 1 1 0.748 0.221 0.229 0.174 0.004 0.004 chr12 120498279 120534158
COQ6 227 87 30 18 1 0 0.880 0.337 0.116 0.070 0.004 0.000 chr14 73945302 73968670
COQ7 185 59 70 44 0 0 0.717 0.229 0.271 0.171 0.000 0.000 chr16 19062614 19085095
COQ8A 205 66 39 30 0 0 0.795 0.256 0.151 0.116 0.000 0.000 chr1 226935294 226992544
COQ8B 204 69 45 29 0 0 0.791 0.267 0.174 0.112 0.000 0.000 chr19 40686530 40721886
COQ9 201 74 55 31 0 0 0.779 0.287 0.213 0.120 0.000 0.000 chr16 57442479 57466270
CORIN 131 31 81 50 0 0 0.508 0.120 0.314 0.194 0.000 0.000 chr4 47589001 47843067
CORO1A 170 53 74 39 0 0 0.659 0.205 0.287 0.151 0.000 0.000 chr16 30178602 30194076
CORO1B 176 54 79 48 0 0 0.682 0.209 0.306 0.186 0.000 0.000 chr11 67430510 67448476
CORO1C 162 55 79 41 0 0 0.628 0.213 0.306 0.159 0.000 0.000 chr12 108640109 108736518
CORO2A 170 49 61 39 0 0 0.659 0.190 0.236 0.151 0.000 0.000 chr9 98115975 98197637
CORO2B 127 21 68 43 0 0 0.492 0.081 0.264 0.167 0.000 0.000 chr15 68573993 68732806
CORO6 182 55 72 46 0 0 0.705 0.213 0.279 0.178 0.000 0.000 chr17 29609762 29627912
CORO7 148 31 82 56 0 0 0.574 0.120 0.318 0.217 0.000 0.000 chr16 4349542 4421596
CORT 213 69 43 34 0 0 0.826 0.267 0.167 0.132 0.000 0.000 chr1 10445031 10456998
COTL1 219 80 28 20 0 0 0.849 0.310 0.109 0.078 0.000 0.000 chr16 84560596 84623078
COX10 160 47 66 41 0 0 0.620 0.182 0.256 0.159 0.000 0.000 chr17 14064504 14213677
COX11 217 82 39 21 0 0 0.841 0.318 0.151 0.081 0.000 0.000 chr17 54955422 54973654
COX14 208 74 46 27 0 0 0.806 0.287 0.178 0.105 0.000 0.000 chr12 50107236 50125453
COX15 210 77 43 24 0 0 0.814 0.298 0.167 0.093 0.000 0.000 chr10 99705868 99737127
COX16 187 71 63 26 1 1 0.725 0.275 0.244 0.101 0.004 0.004 chr14 70320081 70364683
COX17 209 77 45 26 2 0 0.810 0.298 0.174 0.101 0.008 0.000 chr3 119664532 119682406
COX18 191 68 61 33 0 0 0.740 0.264 0.236 0.128 0.000 0.000 chr4 73047362 73074716
COX19 215 71 40 31 1 1 0.833 0.275 0.155 0.120 0.004 0.004 chr7 959852 980549
COX20 148 34 100 63 1 0 0.574 0.132 0.388 0.244 0.004 0.000 chr1 244830658 244850057
COX4I1 215 82 43 23 0 0 0.833 0.318 0.167 0.089 0.000 0.000 chr16 85794695 85812068
COX4I2 149 24 101 73 0 0 0.578 0.093 0.391 0.283 0.000 0.000 chr20 31632912 31650006
COX5A 213 77 42 26 0 0 0.826 0.298 0.163 0.101 0.000 0.000 chr15 74914791 74943073