Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
COL23A1 118 23 64 42 0 0 0.457 0.089 0.248 0.163 0.000 0.000 chr5 178232618 178595393
COL24A1 118 35 75 42 0 0 0.457 0.136 0.291 0.163 0.000 0.000 chr1 85724233 86161772
COL25A1 65 6 91 51 0 0 0.252 0.023 0.353 0.198 0.000 0.000 chr4 108803725 109307658
COL26A1 86 15 93 43 0 0 0.333 0.058 0.360 0.167 0.000 0.000 chr7 101357875 101564024
COL27A1 153 40 45 33 0 0 0.593 0.155 0.174 0.128 0.000 0.000 chr9 114150537 114317511
COL28A1 97 13 114 66 0 0 0.376 0.050 0.442 0.256 0.000 0.000 chr7 7352875 7540873
COL2A1 206 70 46 31 0 0 0.798 0.271 0.178 0.120 0.000 0.000 chr12 47967967 48009476
COL3A1 187 68 60 33 0 0 0.725 0.264 0.233 0.128 0.000 0.000 chr2 188969373 189017746
COL4A1 171 49 42 32 0 0 0.663 0.190 0.163 0.124 0.000 0.000 chr13 110143963 110312157
COL4A2 185 57 22 19 0 0 0.717 0.221 0.085 0.074 0.000 0.000 chr13 110302284 110518209
COL4A3 171 55 62 35 0 0 0.663 0.213 0.240 0.136 0.000 0.000 chr2 227159624 227319792
COL4A4 141 39 67 45 0 0 0.547 0.151 0.260 0.174 0.000 0.000 chr2 226997714 227169205
COL4A5 71 20 172 74 0 0 0.275 0.078 0.667 0.287 0.000 0.000 chrX 108434838 108702545
COL4A6 54 8 182 86 0 0 0.209 0.031 0.705 0.333 0.000 0.000 chrX 108150614 108443422
COL5A1 135 29 50 27 0 0 0.523 0.112 0.194 0.105 0.000 0.000 chr9 134636803 134849843
COL5A2 123 38 97 49 0 0 0.477 0.147 0.376 0.190 0.000 0.000 chr2 189026898 189184761
COL5A3 205 66 35 23 0 0 0.795 0.256 0.136 0.089 0.000 0.000 chr19 9954561 10015504
COL6A1 63 8 111 42 0 0 0.244 0.031 0.430 0.163 0.000 0.000 chr21 45976770 46010048
COL6A2 185 59 61 36 0 0 0.717 0.229 0.236 0.140 0.000 0.000 chr21 46093112 46134801
COL6A2 181 56 60 36 0 0 0.702 0.217 0.233 0.140 0.000 0.000 chr21 46093112 46137848
COL6A3 160 45 57 40 0 0 0.620 0.174 0.221 0.155 0.000 0.000 chr2 237319018 237419164
COL6A5 145 35 80 53 0 0 0.562 0.136 0.310 0.205 0.000 0.000 chr3 130340672 130489846
COL6A6 131 35 73 40 0 0 0.508 0.136 0.283 0.155 0.000 0.000 chr3 130512177 130682042
COL7A1 117 24 106 63 0 0 0.453 0.093 0.411 0.244 0.000 0.000 chr3 48559073 48600329
COL8A1 130 30 88 56 0 0 0.504 0.116 0.341 0.217 0.000 0.000 chr3 99633594 99804217
COL8A2 194 75 53 23 0 0 0.752 0.291 0.205 0.089 0.000 0.000 chr1 36090239 36130222
COL9A1 180 57 57 32 0 0 0.698 0.221 0.221 0.124 0.000 0.000 chr6 70211126 70308084
COL9A2 218 74 34 27 0 0 0.845 0.287 0.132 0.105 0.000 0.000 chr1 40295489 40322286
COL9A3 205 65 31 20 0 0 0.795 0.252 0.120 0.078 0.000 0.000 chr20 62812050 62846159
COLEC10 193 70 60 32 0 0 0.748 0.271 0.233 0.124 0.000 0.000 chr8 119062247 119113455
COLEC11 188 56 42 28 0 0 0.729 0.217 0.163 0.109 0.000 0.000 chr2 3590112 3649644
COLEC12 182 52 39 29 0 0 0.705 0.202 0.151 0.112 0.000 0.000 chr18 311737 505701
COLGALT1 197 59 53 40 0 0 0.764 0.229 0.205 0.155 0.000 0.000 chr19 17550649 17588157
COLGALT2 169 45 53 40 0 0 0.655 0.174 0.205 0.155 0.000 0.000 chr1 183930834 184042728
COLQ 190 68 55 30 1 1 0.736 0.264 0.213 0.116 0.004 0.004 chr3 15445133 15526706
COMMD10 174 61 60 30 0 0 0.674 0.236 0.233 0.116 0.000 0.000 chr5 116080025 116298287
COMMD1 142 46 84 48 0 0 0.550 0.178 0.326 0.186 0.000 0.000 chr2 61900674 62141058
COMMD2 211 79 45 25 0 0 0.818 0.306 0.174 0.097 0.000 0.000 chr3 149733472 149757489
COMMD3 153 45 101 56 0 0 0.593 0.174 0.391 0.217 0.000 0.000 chr10 22311388 22325306
COMMD4 214 79 41 24 0 0 0.829 0.306 0.159 0.093 0.000 0.000 chr15 75331063 75345273
COMMD5 213 76 43 27 0 0 0.826 0.295 0.167 0.105 0.000 0.000 chr8 144845176 144858048
COMMD6 197 65 57 36 0 0 0.764 0.252 0.221 0.140 0.000 0.000 chr13 75520214 75542841
COMMD7 199 66 50 33 0 0 0.771 0.256 0.194 0.128 0.000 0.000 chr20 32697699 32748467
COMMD8 197 73 55 30 1 0 0.764 0.283 0.213 0.116 0.004 0.000 chr4 47445787 47468702
COMMD9 223 83 28 16 1 1 0.864 0.322 0.109 0.062 0.004 0.004 chr11 36267292 36294424
COMP 198 56 53 43 0 0 0.767 0.217 0.205 0.167 0.000 0.000 chr19 18777773 18796305
COMTD1 204 77 52 26 0 0 0.791 0.298 0.202 0.101 0.000 0.000 chr10 75228641 75240957
COMT 212 77 39 22 0 0 0.822 0.298 0.151 0.085 0.000 0.000 chr22 19936772 19974975
COP1 149 44 89 51 0 0 0.578 0.171 0.345 0.198 0.000 0.000 chr1 175939831 176212286
COPA 182 63 61 38 0 0 0.705 0.244 0.236 0.147 0.000 0.000 chr1 160283594 160348250