Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CRYBB2 231 86 22 15 0 0 0.895 0.333 0.085 0.058 0.000 0.000 chr22 25214639 25236869
CRYBB3 226 77 29 25 1 1 0.876 0.298 0.112 0.097 0.004 0.004 chr22 25194858 25212359
CRYBG1 135 36 57 35 0 0 0.523 0.140 0.221 0.136 0.000 0.000 chr6 106355717 106577017
CRYBG2 187 60 61 36 0 0 0.725 0.233 0.236 0.140 0.000 0.000 chr1 26316865 26359130
CRYBG3 157 41 78 50 0 0 0.609 0.159 0.302 0.194 0.000 0.000 chr3 97817011 97949984
CRYGA 196 60 56 40 0 0 0.760 0.233 0.217 0.155 0.000 0.000 chr2 208155740 208168589
CRYGB 206 70 51 34 0 0 0.798 0.271 0.198 0.132 0.000 0.000 chr2 208137573 208151158
CRYGC 221 80 36 24 1 1 0.857 0.310 0.140 0.093 0.004 0.004 chr2 208123137 208134828
CRYGD 226 82 31 22 0 0 0.876 0.318 0.120 0.085 0.000 0.000 chr2 208116607 208129524
CRYGN 225 83 32 21 0 0 0.872 0.322 0.124 0.081 0.000 0.000 chr7 151423832 151445141
CRYGS 197 67 61 38 0 0 0.764 0.260 0.236 0.147 0.000 0.000 chr3 186533443 186549380
CRYL1 124 34 76 41 0 0 0.481 0.132 0.295 0.159 0.000 0.000 chr13 20398669 20530857
CRYM 196 75 58 27 0 0 0.760 0.291 0.225 0.105 0.000 0.000 chr16 21253521 21283290
CRYZL1 179 59 67 39 0 0 0.694 0.229 0.260 0.151 0.000 0.000 chr21 33584341 33646741
CRYZ 185 58 64 38 0 0 0.717 0.225 0.248 0.147 0.000 0.000 chr1 74700486 74738050
CSAD 166 58 86 43 0 0 0.643 0.225 0.333 0.167 0.000 0.000 chr12 53152663 53185925
CSAG1 99 30 148 67 1 0 0.384 0.116 0.574 0.260 0.004 0.000 chrX 152722484 152738721
CSAG2 90 22 139 72 15 0 0.349 0.085 0.539 0.279 0.058 0.000 chrX 152703261 152714273
CSDC2 143 23 96 67 0 0 0.554 0.089 0.372 0.260 0.000 0.000 chr22 41556010 41581666
CSDE1 163 46 77 44 0 0 0.632 0.178 0.298 0.171 0.000 0.000 chr1 114711916 114762984
CSE1L 192 73 57 27 0 0 0.744 0.283 0.221 0.105 0.000 0.000 chr20 49041312 49101949
CSF1R 202 68 54 35 0 0 0.783 0.264 0.209 0.136 0.000 0.000 chr5 150048295 150091554
CSF1 216 81 34 18 1 0 0.837 0.314 0.132 0.070 0.004 0.000 chr1 109905849 109935992
CSF2RA 130 33 77 29 0 0 0.504 0.128 0.298 0.112 0.000 0.000 chrX 1263814 1314935
CSF2RB 179 38 68 57 0 0 0.694 0.147 0.264 0.221 0.000 0.000 chr22 36908628 36945439
CSF2 225 81 31 22 0 0 0.872 0.314 0.120 0.085 0.000 0.000 chr5 132068789 132081170
CSF3R 209 77 42 22 0 0 0.810 0.298 0.163 0.085 0.000 0.000 chr1 36461043 36487913
CSF3 216 79 40 24 1 1 0.837 0.306 0.155 0.093 0.004 0.004 chr17 40010440 40022813
CSGALNACT1 118 20 68 44 0 0 0.457 0.078 0.264 0.171 0.000 0.000 chr8 19399161 19762277
CSGALNACT2 198 66 53 33 0 0 0.767 0.256 0.205 0.128 0.000 0.000 chr10 43133445 43190302
CSH1 213 74 40 28 3 1 0.826 0.287 0.155 0.109 0.012 0.004 chr17 63889918 63901574
CSH2 205 76 50 28 1 0 0.795 0.295 0.194 0.109 0.004 0.000 chr17 63867016 63878677
CSHL1 218 79 37 23 0 0 0.845 0.306 0.143 0.089 0.000 0.000 chr17 63904608 63916258
CSKMT 180 54 75 48 0 0 0.698 0.209 0.291 0.186 0.000 0.000 chr11 62660312 62673108
CSK 196 73 56 27 0 0 0.760 0.283 0.217 0.105 0.000 0.000 chr15 74777080 74808197
CSMD1 63 9 56 23 0 0 0.244 0.035 0.217 0.089 0.000 0.000 chr8 2930361 4999914
CSMD2 32 1 117 63 0 0 0.124 0.004 0.453 0.244 0.000 0.000 chr1 33508998 34170230
CSMD3 39 3 118 54 0 0 0.151 0.012 0.457 0.209 0.000 0.000 chr8 112217928 113441939
CSN1S1 223 83 31 19 0 0 0.864 0.322 0.120 0.074 0.000 0.000 chr4 69926068 69951574
CSN2 223 86 35 19 0 0 0.864 0.333 0.136 0.074 0.000 0.000 chr4 69950256 69970728
CSN3 231 91 25 12 0 0 0.895 0.353 0.097 0.047 0.000 0.000 chr4 70237597 70256432
CSNK1A1L 201 66 56 38 0 0 0.779 0.256 0.217 0.147 0.000 0.000 chr13 37098259 37110664
CSNK1A1 194 70 50 28 0 0 0.752 0.271 0.194 0.109 0.000 0.000 chr5 149487982 149556439
CSNK1D 159 29 78 56 0 0 0.616 0.112 0.302 0.217 0.000 0.000 chr17 82237667 82278700
CSNK1E 205 66 42 31 0 0 0.795 0.256 0.163 0.120 0.000 0.000 chr22 38285691 38322433
CSNK1G1 87 14 132 78 0 0 0.337 0.054 0.512 0.302 0.000 0.000 chr15 64160525 64361173
CSNK1G2 190 55 46 30 0 0 0.736 0.213 0.178 0.116 0.000 0.000 chr19 1936172 1986338
CSNK1G3 146 42 91 52 0 0 0.566 0.163 0.353 0.202 0.000 0.000 chr5 123507177 123622049
CSNK2A1 157 40 71 44 0 0 0.609 0.155 0.275 0.171 0.000 0.000 chr20 467498 548790
CSNK2A2 199 72 46 20 0 0 0.771 0.279 0.178 0.078 0.000 0.000 chr16 58152907 58203106