Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CTSB 218 77 32 22 0 0 0.845 0.298 0.124 0.085 0.000 0.000 chr8 11837524 11873087
CTSC 216 78 35 21 0 0 0.837 0.302 0.136 0.081 0.000 0.000 chr11 88288592 88342736
CTSD 192 59 55 38 2 0 0.744 0.229 0.213 0.147 0.008 0.000 chr11 1747755 1768927
CTSE 150 26 100 72 0 0 0.581 0.101 0.388 0.279 0.000 0.000 chr1 206004264 206028895
CTSF 205 82 49 19 0 0 0.795 0.318 0.190 0.074 0.000 0.000 chr11 66558464 66573606
CTSG 219 86 37 18 1 0 0.849 0.333 0.143 0.070 0.004 0.000 chr14 24568518 24581250
CTSH 206 71 41 25 0 0 0.798 0.275 0.159 0.097 0.000 0.000 chr15 78916058 78950046
CTSK 195 72 58 29 0 0 0.756 0.279 0.225 0.112 0.000 0.000 chr1 150791208 150813260
CTSL 193 68 63 37 0 0 0.748 0.264 0.244 0.143 0.000 0.000 chr9 87721119 87736469
CTSO 174 60 74 36 0 0 0.674 0.233 0.287 0.140 0.000 0.000 chr4 155919118 155958866
CTSS 171 61 70 34 0 0 0.663 0.236 0.271 0.132 0.000 0.000 chr1 150725188 150770778
CTSV 204 76 51 27 0 0 0.791 0.295 0.198 0.105 0.000 0.000 chr9 97024677 97044142
CTSW 182 60 72 43 0 0 0.705 0.233 0.279 0.167 0.000 0.000 chr11 65874837 65888741
CTSZ 217 72 39 32 0 0 0.841 0.279 0.151 0.124 0.000 0.000 chr20 58990185 59012254
CTTNBP2NL 161 55 85 45 0 0 0.624 0.213 0.329 0.174 0.000 0.000 chr1 112391214 112466164
CTTNBP2 81 12 99 62 0 0 0.314 0.047 0.384 0.240 0.000 0.000 chr7 117705651 117878441
CTTN 160 38 80 55 0 0 0.620 0.147 0.310 0.213 0.000 0.000 chr11 70393529 70441575
CTU1 226 84 30 19 0 0 0.876 0.326 0.116 0.074 0.000 0.000 chr19 51092606 51113409
CTU2 208 64 45 37 1 0 0.806 0.248 0.174 0.143 0.004 0.000 chr16 88701503 88720396
CTXN1 211 68 40 30 0 0 0.818 0.264 0.155 0.116 0.000 0.000 chr19 7919491 7931135
CTXN2 153 63 102 40 0 0 0.593 0.244 0.395 0.155 0.000 0.000 chr15 48186665 48208758
CTXN3 235 92 21 12 1 0 0.911 0.357 0.081 0.047 0.004 0.000 chr5 127644082 127663630
CTXND1 197 70 48 25 0 0 0.764 0.271 0.186 0.097 0.000 0.000 chr15 80190481 80257213
CTXND2 185 65 66 33 0 0 0.717 0.252 0.256 0.128 0.000 0.000 chr1 150882136 150918292
CUBN 95 16 74 42 0 0 0.368 0.062 0.287 0.163 0.000 0.000 chr10 16818966 17134811
CUEDC1 105 4 129 84 0 0 0.407 0.016 0.500 0.326 0.000 0.000 chr17 57856243 57960412
CUEDC2 194 64 61 38 0 0 0.752 0.248 0.236 0.147 0.000 0.000 chr10 102418249 102437574
CUL1 168 50 62 41 0 0 0.651 0.194 0.240 0.159 0.000 0.000 chr7 148693903 148806110
CUL2 149 41 79 49 0 0 0.578 0.159 0.306 0.190 0.000 0.000 chr10 35003551 35095341
CUL3 190 69 60 33 0 0 0.736 0.267 0.233 0.128 0.000 0.000 chr2 224465150 224590363
CUL4A 197 68 41 25 0 0 0.764 0.264 0.159 0.097 0.000 0.000 chr13 113204613 113272108
CUL4B 75 25 173 74 0 0 0.291 0.097 0.671 0.287 0.000 0.000 chrX 120518858 120565962
CUL5 155 50 86 45 0 0 0.601 0.194 0.333 0.174 0.000 0.000 chr11 108003898 108112761
CUL7 150 44 102 55 0 0 0.581 0.171 0.395 0.213 0.000 0.000 chr6 43032617 43058851
CUL9 137 45 98 49 0 0 0.531 0.174 0.380 0.190 0.000 0.000 chr6 43177196 43229587
CUTA 169 42 88 62 0 0 0.655 0.163 0.341 0.240 0.000 0.000 chr6 33411442 33423107
CUTC 204 74 45 26 0 0 0.791 0.287 0.174 0.101 0.000 0.000 chr10 99727234 99761134
CUX1 65 3 105 55 0 0 0.252 0.012 0.407 0.213 0.000 0.000 chr7 101811007 102288958
CUX1 67 2 112 66 0 0 0.260 0.008 0.434 0.256 0.000 0.000 chr7 101812626 102263233
CUX2 49 0 142 68 0 0 0.190 0.000 0.550 0.264 0.000 0.000 chr12 111029165 111355554
CUZD1 210 72 45 31 1 0 0.814 0.279 0.174 0.120 0.004 0.000 chr10 122827158 122850857
CWC15 204 73 50 30 0 0 0.791 0.283 0.194 0.116 0.000 0.000 chr11 94957620 94978556
CWC22 187 71 62 30 0 0 0.725 0.275 0.240 0.116 0.000 0.000 chr2 179939876 180012297
CWC25 191 68 60 31 0 0 0.740 0.264 0.233 0.120 0.000 0.000 chr17 38795441 38830321
CWC27 129 42 85 40 0 0 0.500 0.163 0.329 0.155 0.000 0.000 chr5 64763930 65023750
CWF19L1 181 67 65 33 0 0 0.702 0.260 0.252 0.128 0.000 0.000 chr10 100227298 100272638
CWF19L2 195 72 55 28 0 0 0.756 0.279 0.213 0.109 0.000 0.000 chr11 107321360 107462825
CWH43 147 44 92 51 0 0 0.570 0.171 0.357 0.198 0.000 0.000 chr4 48981275 49067079
CX3CL1 214 81 42 23 1 0 0.829 0.314 0.163 0.089 0.004 0.000 chr16 57367490 57390044
CX3CR1 209 64 47 39 0 0 0.810 0.248 0.182 0.151 0.000 0.000 chr3 39258496 39285036