Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CT47A8 1 0 16 5 0 0 0.004 0.000 0.062 0.019 0.000 0.000 chrX 120943422 120956744
CT47A9 1 0 13 10 0 0 0.004 0.000 0.050 0.039 0.000 0.000 chrX 120938561 120951883
CT47B1 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chrX 120867607 120880866
CT47C1 94 34 163 70 0 0 0.364 0.132 0.632 0.271 0.000 0.000 chrX 119067993 119081765
CT55 71 14 184 89 0 0 0.275 0.054 0.713 0.345 0.000 0.000 chrX 135151540 135176398
CT83 107 38 149 65 0 0 0.415 0.147 0.578 0.252 0.000 0.000 chrX 116456686 116467976
CTAG1A 84 18 165 78 0 0 0.326 0.070 0.640 0.302 0.000 0.000 chrX 154580133 154591816
CTAG1B 67 15 176 81 0 0 0.260 0.058 0.682 0.314 0.000 0.000 chrX 154612609 154624282
CTAG2 93 24 161 77 0 0 0.360 0.093 0.624 0.298 0.000 0.000 chrX 154646977 154658579
CTAGE15 110 41 88 47 40 3 0.426 0.159 0.341 0.182 0.155 0.012 chr7 143566801 143579387
CTAGE1 239 93 18 11 0 0 0.926 0.360 0.070 0.043 0.000 0.000 chr18 22408599 22422915
CTAGE4 196 78 59 24 1 1 0.760 0.302 0.229 0.093 0.004 0.004 chr7 144178466 144191080
CTAGE6 95 43 21 14 139 46 0.368 0.167 0.081 0.054 0.539 0.178 chr7 143750089 143762696
CTAGE8 76 34 21 6 161 65 0.295 0.132 0.081 0.023 0.624 0.252 chr7 144261674 144274288
CTAGE9 203 72 54 32 0 0 0.787 0.279 0.209 0.124 0.000 0.000 chr6 131703441 131716017
CTBP1 210 74 42 26 0 0 0.814 0.287 0.163 0.101 0.000 0.000 chr4 1206445 1254130
CTBP2 189 56 44 34 0 0 0.733 0.217 0.171 0.132 0.000 0.000 chr10 124979317 125033071
CTBS 169 55 78 40 0 0 0.655 0.213 0.302 0.155 0.000 0.000 chr1 84544611 84579440
CTC1 200 68 48 30 1 0 0.775 0.264 0.186 0.116 0.004 0.000 chr17 8219815 8253056
CTCFL 211 73 39 27 0 0 0.818 0.283 0.151 0.105 0.000 0.000 chr20 57492166 57530140
CTCF 83 6 138 85 0 0 0.322 0.023 0.535 0.329 0.000 0.000 chr16 67557526 67644177
CTDNEP1 198 65 56 37 0 0 0.767 0.252 0.217 0.143 0.000 0.000 chr17 7238591 7256734
CTDP1 188 64 53 32 0 0 0.729 0.248 0.205 0.124 0.000 0.000 chr18 79674803 79759503
CTDSP1 211 69 42 31 0 0 0.818 0.267 0.163 0.120 0.000 0.000 chr2 218394868 218410941
CTDSP2 172 45 74 49 0 0 0.667 0.174 0.287 0.190 0.000 0.000 chr12 57814927 57851729
CTDSPL2 116 31 102 58 0 0 0.450 0.120 0.395 0.225 0.000 0.000 chr15 44422629 44534038
CTDSPL 82 6 143 82 0 0 0.318 0.023 0.554 0.318 0.000 0.000 chr3 37856880 37989469
CTF1 153 34 102 68 0 0 0.593 0.132 0.395 0.264 0.000 0.000 chr16 30891614 30908547
CTHRC1 203 75 52 27 0 0 0.787 0.291 0.202 0.105 0.000 0.000 chr8 103366538 103387989
CTH 211 80 41 20 0 0 0.818 0.310 0.159 0.078 0.000 0.000 chr1 70406268 70444851
CTIF 71 5 98 60 0 0 0.275 0.019 0.380 0.233 0.000 0.000 chr18 48534031 48868217
CTLA4 209 80 46 24 2 0 0.810 0.310 0.178 0.093 0.008 0.000 chr2 203862771 203878965
CTNNA1 89 11 126 71 0 0 0.345 0.043 0.488 0.275 0.000 0.000 chr5 138748425 138940034
CTNNA2 34 1 107 58 0 0 0.132 0.004 0.415 0.225 0.000 0.000 chr2 79508051 80653780
CTNNA3 23 3 92 39 0 0 0.089 0.012 0.357 0.151 0.000 0.000 chr10 65907523 67701195
CTNNAL1 209 82 38 17 0 0 0.810 0.318 0.147 0.066 0.000 0.000 chr9 108937577 109018499
CTNNB1 170 57 75 43 0 0 0.659 0.221 0.291 0.167 0.000 0.000 chr3 41194505 41245443
CTNNBIP1 154 44 82 52 0 0 0.597 0.171 0.318 0.202 0.000 0.000 chr1 9843276 9915269
CTNNBL1 132 31 73 45 0 0 0.512 0.120 0.283 0.174 0.000 0.000 chr20 37689030 37877118
CTNND1 143 32 102 67 0 0 0.554 0.124 0.395 0.260 0.000 0.000 chr11 57756802 57824540
CTNND2 12 1 130 58 0 0 0.047 0.004 0.504 0.225 0.000 0.000 chr5 10966836 11909446
CTNS 185 59 56 34 0 0 0.717 0.229 0.217 0.132 0.000 0.000 chr17 3631760 3668103
CTPS1 193 71 54 26 0 0 0.748 0.275 0.209 0.101 0.000 0.000 chr1 40974696 41017565
CTPS2 49 9 184 80 0 0 0.190 0.035 0.713 0.310 0.000 0.000 chrX 16582999 16717669
CTR9 202 69 46 27 0 0 0.783 0.267 0.178 0.105 0.000 0.000 chr11 10746246 10784746
CTRB1 0 0 13 1 0 0 0.000 0.000 0.050 0.004 0.000 0.000 chr16 75213988 75229924
CTRB2 2 0 11 2 0 0 0.008 0.000 0.043 0.008 0.000 0.000 chr16 75199103 75212161
CTRC 213 74 41 27 1 1 0.826 0.287 0.159 0.105 0.004 0.004 chr1 15433443 15454242
CTRL 155 43 95 54 0 0 0.601 0.167 0.368 0.209 0.000 0.000 chr16 67924574 67936862
CTSA 214 80 38 21 2 1 0.829 0.310 0.147 0.081 0.008 0.004 chr20 45886335 45903820