Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
CSNK2A3 225 81 32 23 0 0 0.872 0.314 0.124 0.089 0.000 0.000 chr11 11346942 11358250
CSNK2B 210 72 44 29 1 1 0.814 0.279 0.171 0.112 0.004 0.004 chr6 31661080 31675067
CSNKA2IP 192 70 49 28 0 0 0.744 0.271 0.190 0.109 0.000 0.000 chr3 88333456 88472594
CSPG4 186 58 55 33 0 0 0.721 0.225 0.213 0.128 0.000 0.000 chr15 75669322 75717848
CSPG5 180 53 72 46 0 0 0.698 0.205 0.279 0.178 0.000 0.000 chr3 47557238 47583865
CSPP1 78 14 148 80 0 0 0.302 0.054 0.574 0.310 0.000 0.000 chr8 67059392 67201614
CSRNP1 214 68 38 31 1 1 0.829 0.264 0.147 0.120 0.004 0.004 chr3 39136855 39158591
CSRNP2 209 74 42 26 0 0 0.810 0.287 0.163 0.101 0.000 0.000 chr12 51056205 51088596
CSRNP3 122 32 82 46 0 0 0.473 0.124 0.318 0.178 0.000 0.000 chr2 165464698 165694407
CSRP1 215 75 38 27 0 0 0.833 0.291 0.147 0.105 0.000 0.000 chr1 201478530 201512123
CSRP2 193 56 62 46 0 0 0.748 0.217 0.240 0.178 0.000 0.000 chr12 76853709 76884019
CSRP3 207 75 48 29 0 0 0.802 0.291 0.186 0.112 0.000 0.000 chr11 19177030 19206983
CST11 222 90 32 14 2 0 0.860 0.349 0.124 0.054 0.008 0.000 chr20 23445412 23457876
CST1 235 88 20 15 0 0 0.911 0.341 0.078 0.058 0.000 0.000 chr20 23742562 23755935
CST2 234 90 22 14 2 1 0.907 0.349 0.085 0.054 0.008 0.004 chr20 23818769 23831729
CST3 209 68 46 34 1 1 0.810 0.264 0.178 0.132 0.004 0.004 chr20 23628657 23642955
CST4 225 84 32 20 0 0 0.872 0.326 0.124 0.078 0.000 0.000 chr20 23680640 23694038
CST5 222 80 33 23 2 1 0.860 0.310 0.128 0.089 0.008 0.004 chr20 23870934 23884748
CST6 206 70 46 29 0 0 0.798 0.271 0.178 0.112 0.000 0.000 chr11 66007008 66018505
CST7 174 48 79 52 0 0 0.674 0.186 0.306 0.202 0.000 0.000 chr20 24944269 24964928
CST8 219 78 35 25 0 0 0.849 0.302 0.136 0.097 0.000 0.000 chr20 23486117 23501010
CST9L 195 74 57 26 0 0 0.756 0.287 0.221 0.101 0.000 0.000 chr20 23559732 23573484
CST9 210 75 46 29 1 0 0.814 0.291 0.178 0.112 0.004 0.000 chr20 23597410 23610917
CSTA 188 63 61 37 0 0 0.729 0.244 0.236 0.143 0.000 0.000 chr3 122320248 122346969
CSTB 225 79 33 26 0 0 0.872 0.306 0.128 0.101 0.000 0.000 chr21 43768950 43781308
CSTF1 210 69 40 29 0 0 0.814 0.267 0.155 0.112 0.000 0.000 chr20 56387645 56411362
CSTF2T 213 77 41 26 1 0 0.826 0.298 0.159 0.101 0.004 0.000 chr10 51690486 51704595
CSTF2 85 23 169 80 0 0 0.329 0.089 0.655 0.310 0.000 0.000 chrX 100815391 100846520
CSTF3 179 66 70 36 0 0 0.694 0.256 0.271 0.140 0.000 0.000 chr11 33079584 33166480
CSTL1 225 87 29 15 2 1 0.872 0.337 0.112 0.058 0.008 0.004 chr20 23434685 23449930
CSTPP1 111 25 124 71 0 0 0.430 0.097 0.481 0.275 0.000 0.000 chr11 46931761 47167247
CS 157 44 88 51 0 0 0.609 0.171 0.341 0.198 0.000 0.000 chr12 56266699 56305330
CT45A10 66 15 181 83 0 0 0.256 0.058 0.702 0.322 0.000 0.000 chrX 135876065 135898444
CT45A1 8 3 87 39 0 0 0.031 0.012 0.337 0.151 0.000 0.000 chrX 135708639 135728228
CT45A2 11 2 25 11 0 0 0.043 0.008 0.097 0.043 0.000 0.000 chrX 135806668 135825012
CT45A3 99 27 82 43 37 0 0.384 0.105 0.318 0.167 0.143 0.000 chrX 135755044 135773191
CT45A5 64 14 130 60 18 1 0.248 0.054 0.504 0.233 0.070 0.004 chrX 135770852 135790503
CT45A6 19 1 65 10 6 0 0.074 0.004 0.252 0.039 0.023 0.000 chrX 135789685 135807787
CT45A7 3 1 38 14 0 0 0.012 0.004 0.147 0.054 0.000 0.000 chrX 135824229 135842280
CT45A8 4 1 23 5 0 0 0.016 0.004 0.089 0.019 0.000 0.000 chrX 135841497 135859538
CT45A9 2 0 31 3 1 0 0.008 0.000 0.120 0.012 0.004 0.000 chrX 135858418 135876812
CT47A10 2 1 11 7 0 0 0.008 0.004 0.043 0.027 0.000 0.000 chrX 120933701 120947023
CT47A11 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chrX 120928840 120942158
CT47A1 91 30 159 68 0 0 0.353 0.116 0.616 0.264 0.000 0.000 chrX 120977476 120990760
CT47A2 75 16 148 60 0 0 0.291 0.062 0.574 0.233 0.000 0.000 chrX 120972606 120985928
CT47A3 63 8 131 48 3 0 0.244 0.031 0.508 0.186 0.012 0.000 chrX 120967746 120981068
CT47A4 48 6 120 34 5 3 0.186 0.023 0.465 0.132 0.019 0.012 chrX 120962886 120976208
CT47A5 37 4 98 26 2 2 0.143 0.016 0.380 0.101 0.008 0.008 chrX 120958026 120971348
CT47A6 29 1 108 37 3 2 0.112 0.004 0.419 0.143 0.012 0.008 chrX 120953165 120966487
CT47A7 3 1 29 5 0 0 0.012 0.004 0.112 0.019 0.000 0.000 chrX 120948282 120961600