Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
DEAF1 172 49 54 36 0 0 0.667 0.190 0.209 0.140 0.000 0.000 chr11 639233 700222
DECR1 188 64 59 33 0 0 0.729 0.248 0.229 0.128 0.000 0.000 chr8 89996477 90058633
DECR2 183 55 56 36 1 0 0.709 0.213 0.217 0.140 0.004 0.000 chr16 396885 417482
DEDD2 125 25 107 64 0 0 0.484 0.097 0.415 0.248 0.000 0.000 chr19 42193598 42222677
DEDD 168 70 88 34 0 0 0.651 0.271 0.341 0.132 0.000 0.000 chr1 161115974 161137667
DEF6 162 57 91 44 0 0 0.628 0.221 0.353 0.171 0.000 0.000 chr6 35292818 35326771
DEF8 195 60 60 42 0 0 0.756 0.233 0.233 0.163 0.000 0.000 chr16 89943755 89973060
DEFA1B 199 61 49 35 9 8 0.771 0.236 0.190 0.136 0.035 0.031 chr8 6991766 7004198
DEFA1 204 72 41 28 12 4 0.791 0.279 0.159 0.109 0.047 0.016 chr8 6972649 6985092
DEFA3 215 77 36 25 4 0 0.833 0.298 0.140 0.097 0.016 0.000 chr8 7010869 7023297
DEFA4 242 94 14 10 0 0 0.938 0.364 0.054 0.039 0.000 0.000 chr8 6930820 6943306
DEFA5 235 91 20 14 2 0 0.911 0.353 0.078 0.054 0.008 0.000 chr8 7050304 7061739
DEFA6 235 89 19 12 2 2 0.911 0.345 0.074 0.047 0.008 0.008 chr8 6919697 6931076
DEFB103A 85 29 85 39 55 15 0.329 0.112 0.329 0.151 0.213 0.058 chr8 7876392 7887663
DEFB103B 88 38 35 23 131 41 0.341 0.147 0.136 0.089 0.508 0.159 chr8 7423888 7435348
DEFB104A 74 21 93 50 51 13 0.287 0.081 0.360 0.194 0.198 0.050 chr8 7831436 7846242
DEFB104B 98 36 62 33 85 32 0.380 0.140 0.240 0.128 0.329 0.124 chr8 7465308 7480082
DEFB105A 73 29 109 54 47 5 0.283 0.112 0.422 0.209 0.182 0.019 chr8 7816004 7828880
DEFB105B 68 29 113 48 34 9 0.264 0.112 0.438 0.186 0.132 0.035 chr8 7482679 7494593
DEFB106A 80 22 93 55 45 6 0.310 0.085 0.360 0.213 0.174 0.023 chr8 7820139 7834053
DEFB106B 90 37 93 41 51 17 0.349 0.143 0.360 0.159 0.198 0.066 chr8 7477504 7491400
DEFB107A 85 32 102 55 45 7 0.329 0.124 0.395 0.213 0.174 0.027 chr8 7806720 7820716
DEFB107B 4 0 35 5 0 0 0.016 0.000 0.136 0.019 0.000 0.000 chr8 7490911 7514311
DEFB108B 219 85 38 19 0 0 0.849 0.329 0.147 0.074 0.000 0.000 chr11 71828200 71842710
DEFB109B 188 75 61 26 1 0 0.729 0.291 0.236 0.101 0.004 0.000 chr8 7307722 7325096
DEFB110 192 62 65 42 1 1 0.744 0.240 0.252 0.163 0.004 0.004 chr6 50013843 50026994
DEFB112 165 44 84 57 3 0 0.640 0.171 0.326 0.221 0.012 0.000 chr6 50037099 50054929
DEFB113 193 65 64 39 0 0 0.748 0.252 0.248 0.151 0.000 0.000 chr6 49963677 49974625
DEFB114 199 71 57 33 0 0 0.771 0.275 0.221 0.128 0.000 0.000 chr6 49955249 49969164
DEFB115 217 76 39 27 1 1 0.841 0.295 0.151 0.105 0.004 0.004 chr20 31252664 31264632
DEFB116 207 70 48 32 1 1 0.802 0.271 0.186 0.124 0.004 0.004 chr20 31298212 31313585
DEFB118 188 60 66 42 1 0 0.729 0.233 0.256 0.163 0.004 0.000 chr20 31363601 31378923
DEFB119 184 54 68 46 0 0 0.713 0.209 0.264 0.178 0.000 0.000 chr20 31372164 31395590
DEFB121 185 54 71 49 0 0 0.717 0.209 0.275 0.190 0.000 0.000 chr20 31399845 31411215
DEFB123 185 61 69 42 1 0 0.717 0.236 0.267 0.163 0.004 0.000 chr20 31435632 31455257
DEFB124 180 46 70 53 0 0 0.698 0.178 0.271 0.205 0.000 0.000 chr20 31460471 31480127
DEFB125 235 96 20 7 2 1 0.911 0.372 0.078 0.027 0.008 0.004 chr20 82672 102094
DEFB126 229 91 29 14 0 0 0.888 0.353 0.112 0.054 0.000 0.000 chr20 137590 150751
DEFB127 224 91 33 14 1 0 0.868 0.353 0.128 0.054 0.004 0.000 chr20 152454 164163
DEFB128 234 93 22 10 0 0 0.907 0.360 0.085 0.039 0.000 0.000 chr20 182853 194711
DEFB129 224 85 32 18 0 0 0.868 0.329 0.124 0.070 0.000 0.000 chr20 222258 234886
DEFB130A 169 66 80 37 1 0 0.655 0.256 0.310 0.143 0.004 0.000 chr8 12305962 12323316
DEFB130B 1 0 21 0 0 0 0.004 0.000 0.081 0.000 0.000 0.000 chr8 12059389 12076747
DEFB131A 211 76 33 26 14 3 0.818 0.295 0.128 0.101 0.054 0.012 chr4 9439414 9455666
DEFB131B 208 75 44 25 1 1 0.806 0.291 0.171 0.097 0.004 0.004 chr11 71873453 71889561
DEFB132 214 83 43 21 0 0 0.829 0.322 0.167 0.081 0.000 0.000 chr20 252724 266096
DEFB134 223 79 33 24 0 0 0.864 0.306 0.128 0.093 0.000 0.000 chr8 11988174 12005752
DEFB135 214 74 41 30 2 0 0.829 0.287 0.159 0.116 0.008 0.000 chr8 11977256 11989590
DEFB136 212 71 45 34 1 0 0.822 0.275 0.174 0.132 0.004 0.000 chr8 11968937 11979599
DEFB1 238 93 17 11 2 0 0.922 0.360 0.066 0.043 0.008 0.000 chr8 6865592 6882936