JoGo: Joint Open Genome and Omics Platform

Search by Splice Detail Information

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome name (e.g., chr11).

Splicetype

Type of splice site (donor or acceptor).

Reported

Yes: This position is a confirmed splice junction in this transcript. No: This position is a predicted splice candidate, but not used in this transcript.

Haplotypeclass

Group by all or haplotype level (A, AC, ACT, ACTG) of the transcript.

Haplotypeid

Search for specific haplotype IDs (e.g., a0001c0002, a1c2).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

Pos

Exact genomic position (GRCh38).

Median

Median splice score threshold (minimum).

Diff

Score difference threshold (max - min).

Exonnumber

Exon number in the transcript. 0 means predicted (but not used in the transcript).

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regionname	pos	# strand	# exonnumber	max max value among all matched hapids's median splice score	median median value among all matched hapids's splice score	min min value among all matched hapids's median splice score	type	haplotypeid	max_hap_list	min_hap_list	symbol	chr	start	end
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9962	-0.9962	-0.9962	acceptor	a0002c0002t0003g0012	NA18950.hp2 NA18952.hp2 NA18977.hp1 NA18950.hp2 NA18952.hp2 NA18977.hp1	NA18950.hp2 NA18952.hp2 NA18977.hp1 NA18950.hp2 NA18952.hp2 NA18977.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9962	-0.9962	-0.9962	acceptor	a0002c0002t0003g0050	NA18946.hp2 NA18946.hp2	NA18946.hp2 NA18946.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9962	-0.9962	-0.9962	acceptor	a0002c0002t0003g0051	NA18985.hp2 NA18985.hp2	NA18985.hp2 NA18985.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9962	-0.9961	-0.9962	acceptor	a0002c0002t0003g0053	NA19007.hp1 NA19007.hp1	NA19007.hp1 NA19007.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9962	-0.9962	-0.9962	acceptor	a0002c0002t0003g0097	NA18953.hp2 NA18953.hp2	NA18953.hp2 NA18953.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9968	-0.9968	-0.9968	acceptor	a0002c0002t0004g0070	HG02257.hp2 HG02257.hp2	HG02257.hp2 HG02257.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9968	-0.9968	-0.9968	acceptor	a0002c0002t0004g0071	HG02886.hp2 HG02886.hp2	HG02886.hp2 HG02886.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9971	-0.9971	-0.9971	acceptor	a0002c0002t0006g0045	HG03130.hp1 HG03130.hp1	HG03130.hp1 HG03130.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9971	-0.9970	-0.9971	acceptor	a0002c0002t0006g0075	HG03516.hp1 HG03516.hp1	HG03516.hp1 HG03516.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9971	-0.9970	-0.9971	acceptor	a0002c0002t0006g0076	HG02451.hp2 HG02451.hp2	HG02451.hp2 HG02451.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9964	-0.9964	-0.9964	acceptor	a0003c0003t0002g0015	HG02723.hp2 HG03139.hp2 HG03540.hp1 HG02723.hp2 HG03139.hp2 HG03540.hp1	HG02723.hp2 HG03139.hp2 HG03540.hp1 HG02723.hp2 HG03139.hp2 HG03540.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9963	-0.9963	-0.9963	acceptor	a0003c0003t0002g0016	HG02486.hp1 HG03195.hp1 NA19240.hp2 HG02486.hp1 HG03195.hp1 NA19240.hp2	HG02486.hp1 HG03195.hp1 NA19240.hp2 HG02486.hp1 HG03195.hp1 NA19240.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9967	-0.9967	-0.9967	acceptor	a0003c0003t0002g0078	HG02622.hp1 HG02622.hp1	HG02622.hp1 HG02622.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9967	-0.9967	-0.9967	acceptor	a0003c0003t0002g0082	HG03041.hp1 HG03041.hp1	HG03041.hp1 HG03041.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9964	-0.9964	-0.9964	acceptor	a0003c0003t0002g0083	HG03209.hp1 HG03209.hp1	HG03209.hp1 HG03209.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9967	-0.9967	-0.9967	acceptor	a0003c0003t0004g0077	homoSapiens_grch38.hp1 homoSapiens_grch38.hp1	homoSapiens_grch38.hp1 homoSapiens_grch38.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9979	-0.9979	-0.9979	acceptor	a0004c0005t0002g0013	HG00735.hp1 HG01891.hp1 HG03098.hp1 HG00735.hp1 HG01891.hp1 HG03098.hp1	HG00735.hp1 HG01891.hp1 HG03098.hp1 HG00735.hp1 HG01891.hp1 HG03098.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9968	-0.9968	-0.9968	acceptor	a0005c0006t0002g0095	HG01106.hp2 HG01106.hp2	HG01106.hp2 HG01106.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9968	-0.9968	-0.9968	acceptor	a0005c0006t0002g0096	NA21309.hp1 NA21309.hp1	NA21309.hp1 NA21309.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9971	-0.9971	-0.9971	acceptor	a0006c0007t0006g0057	HG02630.hp2 HG02630.hp2	HG02630.hp2 HG02630.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9964	-0.9964	-0.9964	acceptor	a0007c0009t0017g0001	NA18612.hp2 NA18612.hp2	NA18612.hp2 NA18612.hp2	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9366	-0.9366	-0.9366	acceptor	a0008c0010t0002g0065	HG01081.hp1 HG01081.hp1	HG01081.hp1 HG01081.hp1	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	112113145	+	5	-0.9971	-0.9971	-0.9971	acceptor	a0009c0008t0002g0059	HG01255.hp2 HG01255.hp2	HG01255.hp2 HG01255.hp2	C3orf52	chr3	112081389	112123210

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Search Results (Total: 223 hits)