JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM90A22_chr8_7566995_7580006	0/0	a0031	464	1	0	0	0	0	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	a0032	464	1	0	0	0	0	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	a0033	464	1	1	0	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	a0034	464	1	1	0	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	a0035	464	1	1	0	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	a0036	464	1	0	0	0	0	1	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	a0037	464	1	1	0	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A22_chr8_7566995_7580006	0/0	a0038	464	1	0	1	0	0	0	copy fasta	FAM90A22	chr8	7566995	7580006
FAM90A23_chr8_7574644_7587653	0/0	a0001	464	36	4	5	19	1	7	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0002	464	34	13	6	5	3	7	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0003	464	12	1	3	8	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0004	464	8	0	1	4	1	2	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0005	464	5	1	0	0	1	3	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0006	464	5	0	0	4	1	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0007	464	3	0	0	3	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0008	464	3	1	1	0	0	1	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0009	464	3	3	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0010	464	2	0	0	2	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0011	464	2	0	0	0	1	1	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0012	464	2	0	0	2	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0013	464	1	0	0	0	0	1	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0014	464	1	0	0	1	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0015	464	1	0	0	1	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0016	464	1	0	0	1	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0017	464	1	0	0	1	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0018	464	1	0	0	0	0	1	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0019	464	1	0	0	1	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0020	464	1	0	0	1	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0021	464	1	0	0	1	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0022	464	1	0	1	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0023	464	1	0	0	1	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0024	464	1	1	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0025	464	1	0	0	1	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0026	464	1	0	1	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0027	464	1	0	1	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0028	464	1	0	1	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0029	464	1	1	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0030	464	1	1	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0031	464	1	0	0	0	0	1	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0032	464	1	0	1	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0033	464	1	1	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0034	464	1	1	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0035	464	1	0	1	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0036	464	1	1	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0037	464	1	1	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0038	464	1	1	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A23_chr8_7574644_7587653	0/0	a0039	464	1	1	0	0	0	0	copy fasta	FAM90A23	chr8	7574644	7587653
FAM90A7_chr8_7551700_7564712	0/0	a0001	464	2	0	0	0	0	2	copy fasta	FAM90A7	chr8	7551700	7564712
FAM90A7_chr8_7551700_7564712	0/0	a0002	5	1	1	0	0	0	0	copy fasta	FAM90A7	chr8	7551700	7564712
FAM90A7_chr8_7551700_7564712	0/0	a0003	464	1	1	0	0	0	0	copy fasta	FAM90A7	chr8	7551700	7564712