JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FASN_chr17_82073338_82103236	0/0	a0015	2511	1	0	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0016	2511	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0017	2511	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0018	2511	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0019	2511	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0020	2511	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0021	2511	1	0	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0022	2511	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0023	2511	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0024	2511	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0025	2511	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0026	2511	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0027	2511	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0028	2511	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0029	2511	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0030	2511	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0031	2511	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0032	2511	1	0	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0033	2511	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0034	2511	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0035	2511	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0036	2511	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0037	2511	1	0	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0038	2511	1	0	0	0	1	0	copy fasta	FASN	chr17	82073338	82103236
FASTKD1_chr2_169523508_169578865	0/1	a0001	847	184	46	40	70	6	21	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	1/0	a0002	847	179	43	20	87	7	21	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	a0003	847	23	0	0	20	1	2	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	a0004	847	3	3	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	a0005	847	1	1	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	a0006	847	1	1	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	a0007	847	1	0	0	1	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD2_chr2_206760606_206801189	1/1	a0001	710	331	63	59	154	15	38	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	a0002	710	50	23	2	16	1	8	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	a0003	710	7	7	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	a0004	710	4	3	1	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	a0005	710	2	2	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD3_chr5_7854159_7874031	0/0	a0001	662	286	73	54	109	14	36	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	1/1	a0002	662	85	5	9	59	1	9	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	a0003	662	75	9	12	52	0	2	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	a0004	662	5	0	0	5	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	a0005	661	4	1	2	0	0	1	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	a0006	662	2	2	0	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	a0007	662	1	0	0	1	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	a0008	662	1	1	0	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	a0009	662	1	0	1	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	a0010	661	1	0	0	0	1	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	a0011	662	1	1	0	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD5_chr20_3141519_3164865	1/1	a0001	764	374	71	73	171	10	47	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0002	764	15	14	1	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0003	764	12	3	5	0	3	1	copy fasta	FASTKD5	chr20	3141519	3164865