JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBXO11_chr2_47801920_47911498	0/0	a0002	927	3	3	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	a0003	928	3	1	1	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	a0004	922	2	1	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	a0005	927	1	1	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	a0006	927	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	a0007	927	1	0	1	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO15_chr18_74068368_74152834	1/1	a0001	510	317	86	61	127	10	31	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	a0002	510	2	0	2	0	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	a0003	510	2	0	0	2	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	a0004	510	1	0	0	0	0	1	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	a0005	510	1	0	1	0	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	a0006	510	1	0	0	1	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO16_chr8_28423412_28495229	1/0	a0001	292	192	31	34	89	10	27	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/1	a0002	292	157	38	22	79	3	14	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	a0003	292	33	29	3	0	1	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	a0004	292	5	0	0	5	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	a0005	292	5	0	1	4	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	a0006	292	1	0	0	0	0	1	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	a0007	292	1	0	0	1	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO17_chr19_38936401_38980742	1/1	a0001	278	394	90	73	165	18	46	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	a0002	278	2	2	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	a0003	278	1	0	1	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	a0004	278	1	0	0	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO21_chr12_117136991_117195470	1/1	a0001	621	402	88	68	192	14	38	copy fasta	FBXO21	chr12	117136991	117195470
FBXO22_chr15_75898878_75947511	1/1	a0001	403	380	86	56	182	12	42	copy fasta	FBXO22	chr15	75898878	75947511
FBXO24_chr7_100581328_100606117	1/1	a0001	580	263	47	37	128	13	36	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	a0002	580	74	45	19	1	3	6	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	a0003	580	1	0	0	0	0	1	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	a0004	580	1	0	0	1	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	a0005	580	1	0	0	0	0	1	copy fasta	FBXO24	chr7	100581328	100606117
FBXO25_chr8_401958_482967	0/1	a0001	358	181	79	23	60	4	14	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	1/0	a0002	358	141	5	38	71	8	18	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	a0003	358	53	11	8	26	1	7	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	a0004	358	23	0	2	19	0	2	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	a0005	358	13	0	7	0	1	5	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	a0006	358	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO27_chr19_39019021_39037549	1/1	a0001	283	423	94	76	186	16	49	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	a0002	283	1	0	0	0	0	1	copy fasta	FBXO27	chr19	39019021	39037549
FBXO28_chr1_224109111_224167047	1/1	a0001	368	392	96	72	172	14	36	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	a0002	368	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	a0003	368	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO2_chr1_11643387_11659429	0/1	a0001	297	154	63	26	44	2	18	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	1/0	a0002	296	136	15	32	58	12	18	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	a0003	296	116	3	18	83	2	10	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	a0004	295	10	10	0	0	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	a0005	297	9	1	2	4	0	2	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	a0006	295	1	1	0	0	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	a0007	297	1	1	0	0	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	a0008	296	1	0	0	1	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO30_chr6_145788502_145819795	1/0	a0001	745	227	72	45	91	5	13	copy fasta	FBXO30	chr6	145788502	145819795