Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AGXT2_chr5_34993102_35052949	1/0	a0018	514	2	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0019	514	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0020	514	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0021	514	1	1	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0022	514	1	0	0	0	0	1	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0023	514	1	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0024	514	1	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT_chr2_240863824_240885500	1/1	a0001	392	367	73	51	192	16	33	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0002	392	22	0	0	18	0	4	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0003	392	17	3	10	0	2	2	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0004	392	6	0	2	4	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0005	392	6	6	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0006	392	5	5	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0007	392	3	3	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0008	392	3	0	0	1	0	2	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0009	392	2	1	0	0	0	1	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0010	392	2	0	2	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0011	392	2	2	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0012	392	2	0	0	2	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0013	392	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0014	392	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0015	392	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0016	392	1	1	0	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0017	392	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0018	392	1	0	1	0	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	a0019	392	1	0	0	1	0	0	copy fasta	AGXT	chr2	240863824	240885500
AHCTF1_chr1_246834098_246936948	0/0	a0001	2266	166	49	20	83	3	11	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	1/0	a0002	2266	85	3	21	45	4	11	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/1	a0003	2266	75	15	20	25	3	11	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0004	2266	11	11	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0005	2266	8	7	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0006	2266	4	4	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0007	2266	3	0	2	0	1	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0008	2266	2	0	1	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0009	2266	2	0	0	0	0	2	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0010	2266	2	0	2	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0011	2266	2	2	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0012	2266	1	0	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0013	2266	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0014	2266	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0015	2266	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0016	2266	1	0	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0017	2266	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0018	2266	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0019	2266	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0020	2266	1	0	1	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0021	2266	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0022	2266	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0023	2266	1	1	0	0	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0024	2266	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948