JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOLH1_chr11_49140092_49213602	0/0	a0004	750	5	5	0	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	a0005	750	2	1	1	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLR1_chr11_72187140_72201299	1/1	a0001	257	411	96	72	179	16	46	copy fasta	FOLR1	chr11	72187140	72201299
FOLR1_chr11_72187140_72201299	0/0	a0002	257	1	0	0	1	0	0	copy fasta	FOLR1	chr11	72187140	72201299
FOLR2_chr11_72211794_72226950	1/1	a0001	255	380	92	66	159	14	47	copy fasta	FOLR2	chr11	72211794	72226950
FOLR2_chr11_72211794_72226950	0/0	a0002	255	2	2	0	0	0	0	copy fasta	FOLR2	chr11	72211794	72226950
FOLR2_chr11_72211794_72226950	0/0	a0003	255	1	0	0	0	0	1	copy fasta	FOLR2	chr11	72211794	72226950
FOLR2_chr11_72211794_72226950	0/0	a0004	255	1	0	0	1	0	0	copy fasta	FOLR2	chr11	72211794	72226950
FOLR3_chr11_72130725_72144892	0/1	a0001	106	326	72	52	149	13	39	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	1/0	a0002	245	44	20	9	12	1	1	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	a0003	106	9	1	3	0	1	4	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	a0004	245	2	2	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	a0005	106	1	0	0	0	1	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	a0006	245	1	0	0	1	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	a0007	192	1	1	0	0	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOSB_chr19_45462996_45480179	1/1	a0001	338	433	87	84	198	14	48	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	a0002	338	1	1	0	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSL1_chr11_65887049_65905388	1/1	a0001	271	436	98	70	208	14	44	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	a0002	271	1	0	0	1	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	a0003	271	1	0	0	1	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL2_chr2_28387858_28422317	1/1	a0001	326	360	82	76	148	10	42	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	a0002	326	1	1	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	a0003	113	1	0	0	1	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	a0004	326	1	1	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	a0005	326	1	0	0	1	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOS_chr14_75273828_75287230	1/1	a0001	380	445	89	74	216	16	48	copy fasta	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	0/0	a0002	380	1	1	0	0	0	0	copy fasta	FOS	chr14	75273828	75287230
FOXA1_chr14_37584552_37600249	0/1	a0001	472	260	42	48	135	8	26	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	1/0	a0002	472	120	51	24	27	5	12	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	a0003	472	8	0	4	0	2	2	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	a0004	472	1	0	0	0	1	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	a0005	472	1	1	0	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	a0006	472	1	0	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	a0007	472	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	a0008	472	1	0	0	1	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	0/0	a0009	472	1	0	1	0	0	0	copy fasta	FOXA1	chr14	37584552	37600249
FOXA2_chr20_22575998_22589572	0/0	a0001	463	359	92	60	153	12	42	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	a0002	463	4	0	4	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	a0003	463	4	4	0	0	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	a0004	463	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	a0005	463	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	a0006	463	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	a0007	463	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	0/0	a0008	463	1	0	0	1	0	0	copy fasta	FOXA2	chr20	22575998	22589572
FOXA3_chr19_45859326_45878797	1/1	a0001	350	442	93	84	203	16	44	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	a0002	350	1	1	0	0	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	0/0	a0003	350	1	0	0	1	0	0	copy fasta	FOXA3	chr19	45859326	45878797
FOXB1_chr15_59999311_60012444	1/1	a0001	325	441	100	68	205	18	48	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	a0002	325	2	0	0	2	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	a0003	325	1	0	1	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444