Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AK9_chr6_109487855_109696202	0/0	a0014	1911	1	1	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0015	1911	1	0	0	1	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0016	1911	1	0	0	1	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0017	1910	1	0	0	0	0	1	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0018	1911	1	0	1	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0019	1911	1	0	0	0	0	1	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0020	1911	1	0	1	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0021	1911	1	0	0	1	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0022	1911	1	1	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AKAIN1_chr18_5137911_5202257	1/1	a0001	69	346	60	51	182	12	39	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	a0002	69	74	36	21	10	4	3	copy fasta	AKAIN1	chr18	5137911	5202257
AKAP10_chr17_19899302_19982828	0/0	a0001	662	130	53	31	24	8	14	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	1/1	a0002	662	121	22	28	45	8	16	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	a0003	662	19	0	0	19	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	a0004	662	5	5	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	a0005	662	2	2	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	a0006	662	1	0	1	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP11_chr13_42267152_42328261	1/1	a0001	1901	319	75	66	129	16	31	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0002	1901	17	1	0	15	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0003	1901	11	0	0	10	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0004	1901	3	3	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0005	1901	3	3	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0006	1901	3	0	0	3	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0007	1901	2	1	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0008	1901	2	1	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0009	1901	2	1	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0010	1901	2	0	0	2	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0011	1901	2	0	2	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0012	1901	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0013	1901	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0014	1901	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0015	1901	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0016	1901	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0017	1901	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0018	1901	1	0	1	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0019	1901	1	0	0	0	0	1	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0020	1901	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0021	1901	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0022	1901	1	0	0	1	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP11_chr13_42267152_42328261	0/0	a0023	1901	1	1	0	0	0	0	copy fasta	AKAP11	chr13	42267152	42328261
AKAP12_chr6_151234967_151363559	0/0	a0001	1783	99	5	25	52	7	10	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	1/0	a0002	1782	78	18	14	37	0	8	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0003	1783	28	3	4	20	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/1	a0004	1783	15	5	3	1	0	5	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0005	1783	12	10	1	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0006	1783	9	9	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0007	1783	8	8	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0008	1782	4	0	4	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0009	1783	4	0	3	0	1	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0010	1782	4	2	0	2	0	0	copy fasta	AKAP12	chr6	151234967	151363559