JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GMPPA_chr2_219493891_219511989	0/0	a0004	420	1	0	0	1	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	a0005	420	1	0	0	1	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	a0006	420	1	0	0	0	1	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPB_chr3_49714916_49728951	0/1	a0001	360	323	88	62	128	14	30	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	1/0	a0002	360	3	2	0	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPR2_chr14_24227929_24244242	1/1	a0001	348	413	84	67	200	14	46	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	a0002	348	2	0	1	0	0	1	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	a0003	348	1	1	0	0	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	a0004	348	1	0	0	0	0	1	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	a0005	348	1	1	0	0	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	a0006	348	1	1	0	0	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	a0007	348	1	1	0	0	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR_chr6_16233587_16300549	0/0	a0000	0	5	0	0	5	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/1	a0001	345	263	78	40	105	2	37	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	1/0	a0002	345	73	6	34	21	4	7	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	a0003	345	1	1	0	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	a0004	345	1	1	0	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	a0005	61	1	0	0	1	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPS_chr3_155865650_155949020	1/1	a0001	693	376	90	76	149	14	45	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	a0002	17	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	a0003	693	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	a0004	693	1	0	0	1	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	a0005	693	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GNA11_chr19_3089362_3128999	1/0	a0001	359	419	95	74	185	18	46	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	a0002	359	3	3	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	a0003	359	2	0	2	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	a0004	359	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA12_chr7_2723105_2849308	1/1	a0001	381	320	85	56	123	14	40	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	a0002	381	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	a0003	381	1	0	0	1	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA13_chr17_65004289_65061740	1/1	a0001	377	178	87	36	26	2	25	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	a0002	377	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	a0003	377	1	0	0	0	0	1	copy fasta	GNA13	chr17	65004289	65061740
GNA14_chr9_77418079_77653322	1/1	a0001	355	236	82	58	76	2	16	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	a0002	355	1	0	0	1	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	a0003	355	1	0	0	1	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	a0004	355	1	1	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/0	a0005	355	1	1	0	0	0	0	copy fasta	GNA14	chr9	77418079	77653322
GNA15_chr19_3131033_3168749	1/1	a0001	374	439	96	82	191	18	50	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	a0002	374	3	3	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	a0003	374	3	0	0	3	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	a0004	374	1	1	0	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	a0005	374	1	0	1	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	a0006	374	1	0	0	1	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	a0007	374	1	0	1	0	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNA15_chr19_3131033_3168749	0/0	a0008	374	1	0	0	1	0	0	copy fasta	GNA15	chr19	3131033	3168749
GNAI1_chr7_80129831_80231181	1/1	a0001	354	311	96	66	94	13	40	copy fasta	GNAI1	chr7	80129831	80231181
GNAI1_chr7_80129831_80231181	0/0	a0002	354	1	0	0	0	1	0	copy fasta	GNAI1	chr7	80129831	80231181
GNAI2_chr3_50231204_50264362	1/1	a0001	355	329	88	61	130	18	30	copy fasta	GNAI2	chr3	50231204	50264362
GNAI2_chr3_50231204_50264362	0/0	a0002	355	1	0	1	0	0	0	copy fasta	GNAI2	chr3	50231204	50264362