JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6L24_chr15_28342851_28363084	0/0	a0009	844	4	0	0	3	1	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0010	838	4	1	1	0	0	2	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0011	826	4	0	1	0	1	2	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0012	832	3	0	1	0	0	2	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0013	826	3	0	0	0	0	3	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0014	888	3	0	0	3	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0015	850	2	0	0	2	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0016	832	2	0	0	0	0	2	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0017	832	2	1	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0018	832	2	0	0	2	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0019	826	2	1	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0020	54	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0021	838	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0022	838	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0023	891	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0024	845	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0025	838	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0026	838	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0027	838	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0028	838	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0029	793	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0030	793	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0031	719	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0032	832	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0033	599	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0034	832	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0035	832	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0036	832	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0037	832	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0038	832	1	0	0	0	0	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0039	826	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0040	826	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0041	826	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0042	826	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0043	826	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0044	833	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L25_chr15_28548568_28568779	0/0	a0001	826	32	0	15	3	5	9	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0002	826	18	1	10	0	6	1	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0003	826	12	2	6	0	1	3	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0004	826	7	1	3	3	0	0	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0005	826	5	0	2	0	0	3	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0006	832	4	0	2	0	2	0	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0007	826	4	1	0	0	0	3	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0008	826	3	0	0	2	0	1	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0009	850	2	1	0	0	0	1	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0010	833	2	0	0	2	0	0	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0011	826	2	0	2	0	0	0	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0012	862	1	1	0	0	0	0	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0013	844	1	0	1	0	0	0	copy fasta	GOLGA6L25	chr15	28548568	28568779
GOLGA6L25_chr15_28548568_28568779	0/0	a0014	838	1	0	1	0	0	0	copy fasta	GOLGA6L25	chr15	28548568	28568779