Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCA4_chr1_93987834_94126148	0/0	a0047	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0048	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0049	2273	1	0	0	1	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0050	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0051	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA5_chr17_69239311_69332133	0/0	a0001	1642	141	33	25	57	7	19	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/1	a0002	1642	122	19	25	58	5	14	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0003	1642	42	14	14	9	2	3	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	1/0	a0004	1642	18	14	3	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0005	1642	8	5	3	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0006	1642	6	6	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0007	1642	3	0	0	3	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0008	1642	2	0	0	2	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0009	1642	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0010	1642	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0011	1642	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0012	1642	1	1	0	0	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0013	1642	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0014	1642	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0015	1642	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	0/0	a0016	1642	1	0	0	1	0	0	copy fasta	ABCA5	chr17	69239311	69332133
ABCA6_chr17_69073702_69146895	0/1	a0001	1617	111	14	23	43	12	18	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0002	1617	92	11	10	56	3	12	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0003	1617	31	27	4	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0004	1617	24	0	10	11	0	3	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0005	1617	19	6	5	5	1	2	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	1/0	a0006	1617	16	12	3	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0007	1617	9	7	0	2	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0008	1617	4	0	0	4	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0009	1617	2	2	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0010	1617	2	0	2	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0011	1617	2	0	0	2	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0012	1617	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0013	1617	1	0	1	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0014	1617	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0015	1617	1	0	0	0	0	1	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0016	1617	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0017	1617	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0018	1617	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0019	1617	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0020	1617	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0021	1617	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0022	1617	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0023	1617	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0024	1617	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	a0025	1617	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA7_chr19_1035107_1070572	1/0	a0001	2146	7	0	1	5	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/1	a0002	2146	4	0	0	0	2	1	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0003	2146	2	2	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0004	2146	2	1	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572