JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPCPD1_chr20_5539439_5616006	0/0	a0003	672	1	0	1	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	a0004	672	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPD1L_chr3_32101620_32173709	1/1	a0001	351	359	89	66	154	14	34	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	a0002	351	1	1	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1_chr12_50099008_50116313	1/1	a0001	349	395	92	78	175	10	38	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	a0002	349	4	0	0	4	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	a0003	349	1	0	0	1	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	a0004	349	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	a0005	349	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	a0006	349	1	0	0	1	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	a0007	349	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	a0008	349	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	a0009	349	1	0	0	1	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD2_chr2_156431379_156591403	0/0	a0001	727	167	27	25	86	4	25	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	1/1	a0002	727	78	23	17	27	2	7	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	a0003	727	8	8	0	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	a0004	727	1	0	0	1	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPER1_chr7_1083113_1098810	1/0	a0001	375	391	86	61	195	12	36	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/1	a0002	375	47	9	16	5	6	10	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	a0003	375	3	0	2	1	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	a0004	375	2	0	2	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	a0005	375	1	0	1	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	a0006	375	1	0	0	1	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	a0007	375	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPHA2_chr11_64929471_64940893	1/1	a0001	129	427	88	70	209	16	42	copy fasta	GPHA2	chr11	64929471	64940893
GPHA2_chr11_64929471_64940893	0/0	a0002	78	1	0	0	1	0	0	copy fasta	GPHA2	chr11	64929471	64940893
GPHB5_chr14_63307835_63323935	1/1	a0001	130	399	98	79	170	15	35	copy fasta	GPHB5	chr14	63307835	63323935
GPHB5_chr14_63307835_63323935	0/0	a0002	130	19	0	0	19	0	0	copy fasta	GPHB5	chr14	63307835	63323935
GPHB5_chr14_63307835_63323935	0/0	a0003	130	2	0	1	0	1	0	copy fasta	GPHB5	chr14	63307835	63323935
GPHB5_chr14_63307835_63323935	0/0	a0004	130	1	0	0	0	0	1	copy fasta	GPHB5	chr14	63307835	63323935
GPHB5_chr14_63307835_63323935	0/0	a0005	130	1	0	0	1	0	0	copy fasta	GPHB5	chr14	63307835	63323935
GPHN_chr14_66503147_67186803	1/1	a0001	769	232	60	48	104	4	14	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	a0002	769	2	0	2	0	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPIHBP1_chr8_143208218_143222170	0/0	a0000	0	1	0	1	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/1	a0001	184	69	34	7	15	3	9	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	1/0	a0002	184	21	5	4	9	1	1	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	a0003	184	15	15	0	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPI_chr19_34360196_34407413	1/1	a0001	558	309	84	60	109	18	36	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	a0002	558	2	0	0	0	0	2	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	a0003	558	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	a0004	558	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	a0005	558	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPKOW_chrX_49108407_49128735	1/1	a0001	476	257	73	42	99	11	30	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	a0002	476	6	0	6	0	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	a0003	476	6	0	0	6	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	a0004	476	3	0	0	3	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	a0005	157	2	0	0	2	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	a0006	470	1	0	0	1	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPKOW_chrX_49108407_49128735	0/0	a0007	476	1	1	0	0	0	0	copy fasta	GPKOW	chrX	49108407	49128735
GPLD1_chr6_24420832_24494578	0/0	a0001	840	103	12	16	66	1	8	copy fasta	GPLD1	chr6	24420832	24494578