JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GPLD1_chr6_24420832_24494578	0/1	a0002	840	68	3	19	34	2	9	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0003	840	53	19	14	11	1	8	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0004	840	29	0	3	20	0	6	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0005	840	26	22	4	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0006	840	22	0	11	10	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0007	840	9	9	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0008	840	8	8	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0009	840	6	0	0	6	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0010	840	3	1	1	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0011	840	2	1	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0012	840	2	0	2	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0013	840	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0014	840	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0015	840	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0016	840	2	0	0	0	1	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0017	840	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0018	840	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0019	840	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0020	840	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0021	840	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0022	840	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0023	840	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0024	840	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	1/0	a0025	840	1	0	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0026	840	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0027	840	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0028	840	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0029	840	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0030	840	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0031	840	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0032	840	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0033	840	1	0	0	0	1	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	a0034	840	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPM6A_chr4_175627937_175817264	1/1	a0001	278	270	76	60	92	6	34	copy fasta	GPM6A	chr4	175627937	175817264
GPM6B_chrX_13765939_13822093	1/1	a0001	328	328	68	58	161	11	28	copy fasta	GPM6B	chrX	13765939	13822093
GPN1_chr2_27624050_27656511	1/1	a0001	374	359	78	66	161	14	38	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	a0002	374	2	0	0	2	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	a0003	374	2	2	0	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	a0004	374	2	2	0	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	a0005	374	1	0	0	1	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN2_chr1_26871132_26895283	0/1	a0001	310	229	68	46	70	12	32	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	1/0	a0002	310	21	2	10	0	4	4	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	a0003	310	6	6	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	a0004	310	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	a0005	310	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN3_chr12_110447486_110473257	1/1	a0001	284	321	90	66	112	16	35	copy fasta	GPN3	chr12	110447486	110473257
GPN3_chr12_110447486_110473257	0/0	a0002	284	2	0	0	0	0	2	copy fasta	GPN3	chr12	110447486	110473257
GPN3_chr12_110447486_110473257	0/0	a0003	284	1	0	0	0	0	1	copy fasta	GPN3	chr12	110447486	110473257
GPNMB_chr7_23241775_23280108	1/1	a0001	560	342	80	63	142	12	43	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	a0002	560	20	3	0	17	0	0	copy fasta	GPNMB	chr7	23241775	23280108