JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GSTT4_chr22_23993401_24010453	0/0	a0006	241	1	0	0	0	0	1	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	a0007	241	1	1	0	0	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	a0008	241	1	0	0	1	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTZ1_chr14_77316036_77336597	0/1	a0001	216	227	62	32	101	4	27	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	a0002	216	147	24	19	91	7	6	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	1/0	a0003	216	51	6	26	4	6	8	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	a0004	216	3	0	0	3	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	a0005	216	2	1	0	0	1	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	a0006	216	1	0	1	0	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	a0007	216	1	0	0	0	0	1	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	a0008	216	1	0	0	1	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	a0009	216	1	1	0	0	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSX1_chr13_27787483_27799768	0/0	a0001	264	438	91	82	197	18	50	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	a0002	264	1	0	0	1	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	a0003	264	1	1	0	0	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX2_chr4_54095163_54107498	0/1	a0001	304	370	89	66	156	16	42	copy fasta	GSX2	chr4	54095163	54107498
GSX2_chr4_54095163_54107498	1/0	a0002	304	2	1	0	0	0	0	copy fasta	GSX2	chr4	54095163	54107498
GTDC1_chr2_143933068_144337512	0/0	a0001	458	84	32	11	25	3	13	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	1/1	a0002	458	28	11	3	5	3	4	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	a0003	458	4	4	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	a0004	458	2	2	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	a0005	458	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	a0006	458	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	a0007	458	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	a0008	458	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	a0009	458	1	0	0	0	0	1	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	a0010	458	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTF2A1L_chr2_48612856_48684604	1/1	a0001	478	265	79	49	94	10	31	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	a0002	478	67	8	13	33	4	9	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	a0003	478	3	1	2	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	a0004	478	2	2	0	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	a0005	478	2	0	2	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	a0006	478	1	1	0	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	a0007	478	1	0	0	0	0	1	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	a0008	478	1	0	0	0	0	1	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	a0009	478	1	1	0	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	a0010	478	1	0	0	1	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1_chr14_81170452_81225959	1/1	a0001	376	350	98	54	146	10	40	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A2_chr15_59633062_59662515	1/1	a0001	109	436	90	86	194	18	46	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2B_chr1_88847633_88896567	1/1	a0001	316	371	96	68	156	12	37	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	a0002	316	1	0	0	0	0	1	copy fasta	GTF2B	chr1	88847633	88896567
GTF2E1_chr3_120737744_120788069	1/1	a0001	439	284	77	55	99	14	37	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	a0002	439	84	0	17	65	0	2	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	a0003	439	4	3	1	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	a0004	439	1	0	1	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	a0005	439	1	1	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	a0006	439	1	1	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	a0007	439	1	0	0	0	0	1	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E2_chr8_30573318_30663236	1/1	a0001	291	378	90	64	172	12	38	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2F1_chr19_6374572_6398164	1/1	a0001	517	370	85	64	166	13	40	copy fasta	GTF2F1	chr19	6374572	6398164