JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GTF2IRD2_chr7_74791151_74856605	1/0	a0005	949	1	0	0	0	0	0	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2I_chr7_74652718_74765692	1/1	a0001	998	170	70	35	33	10	20	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	a0002	998	3	2	1	0	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	a0003	998	1	0	0	1	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF3A_chr13_27419619_27440823	1/1	a0001	13	420	100	74	190	14	40	copy fasta	GTF3A	chr13	27419619	27440823
GTF3C1_chr16_27455613_27554913	1/1	a0001	2109	193	71	35	68	6	11	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0002	2109	11	0	7	0	4	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0003	2109	3	0	0	2	0	1	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0004	2109	3	3	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0005	2109	2	2	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0006	2109	1	0	0	0	0	1	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0007	2109	1	0	1	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0008	2109	1	0	1	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0009	2109	1	0	0	1	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0010	2109	1	0	0	0	0	1	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0011	2109	1	1	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0012	2109	1	1	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	a0013	2109	1	0	0	1	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C2_chr2_27320854_27361764	1/1	a0001	911	281	82	60	90	15	32	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	a0002	911	4	0	0	4	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	a0003	911	1	0	0	0	1	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C3_chr2_196758035_196804683	1/0	a0001	886	205	68	55	47	12	22	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/1	a0002	886	46	15	9	15	0	6	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	a0003	886	1	1	0	0	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C4_chr9_132665464_132699953	1/1	a0001	822	415	87	73	197	16	40	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	a0002	822	7	7	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	a0003	822	2	0	2	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	a0004	822	1	0	0	0	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	a0005	822	1	0	1	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	a0006	822	1	0	0	0	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	a0007	822	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C5_chr9_133025997_133063503	1/1	a0001	519	377	89	74	164	14	34	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	a0002	519	1	1	0	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	a0003	519	1	0	1	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	a0004	519	1	0	1	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C6_chr6_110953706_110972872	1/1	a0001	213	333	85	67	132	10	37	copy fasta	GTF3C6	chr6	110953706	110972872
GTF3C6_chr6_110953706_110972872	0/0	a0002	213	12	0	3	6	0	3	copy fasta	GTF3C6	chr6	110953706	110972872
GTF3C6_chr6_110953706_110972872	0/0	a0003	213	1	1	0	0	0	0	copy fasta	GTF3C6	chr6	110953706	110972872
GTPBP10_chr7_90341716_90396453	0/1	a0001	387	205	31	44	91	5	33	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	a0002	387	104	36	16	40	4	8	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	a0003	387	58	20	5	29	0	4	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	a0004	387	13	0	9	0	3	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	1/0	a0005	387	7	6	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	a0006	387	3	3	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP1_chr22_38700944_38738587	1/1	a0001	669	378	89	57	176	12	42	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	a0002	669	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	a0003	669	1	0	1	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	a0004	669	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	a0005	669	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP2_chr6_43615494_43634264	1/1	a0001	602	379	97	69	159	14	38	copy fasta	GTPBP2	chr6	43615494	43634264