JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HLA-DRB1_chr6_32573775_32594848	0/0	a0016	266	4	0	0	0	0	4	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0017	266	4	0	0	4	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0018	266	4	0	0	4	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0019	266	4	0	0	4	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0020	266	3	1	1	1	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0021	266	3	2	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0022	266	3	3	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0023	266	3	1	2	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0024	266	2	0	1	0	1	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0025	266	2	2	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0026	266	1	0	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0027	266	1	0	0	0	0	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0028	266	1	0	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0029	266	1	1	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0030	266	1	1	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0031	266	1	1	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0032	266	1	0	0	1	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB5_chr6_32512353_32535287	1/0	a0001	266	12	0	0	6	0	5	copy fasta	HLA-DRB5	chr6	32512353	32535287
HLA-DRB5_chr6_32512353_32535287	0/0	a0002	266	7	0	0	4	0	3	copy fasta	HLA-DRB5	chr6	32512353	32535287
HLA-E_chr6_30484509_30499194	0/0	a0001	358	243	33	39	154	5	12	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/1	a0002	358	206	57	38	70	8	32	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	a0003	358	3	0	0	3	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	a0004	358	2	0	1	0	1	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	a0005	358	1	1	0	0	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	a0006	345	1	0	0	1	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	a0007	358	1	1	0	0	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-F_chr6_29718434_29732296	0/1	a0001	442	286	55	49	142	13	26	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0002	442	114	22	11	62	1	18	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0003	442	19	4	11	2	1	1	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0004	442	13	10	2	0	0	1	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0005	442	4	0	0	4	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0006	442	2	2	0	0	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0007	442	1	0	0	1	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0008	138	1	0	0	1	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0009	442	1	0	0	0	1	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0010	442	1	1	0	0	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-F_chr6_29718434_29732296	0/0	a0011	442	1	0	1	0	0	0	copy fasta	HLA-F	chr6	29718434	29732296
HLA-G_chr6_29822825_29836021	0/0	a0001	338	287	45	71	133	11	27	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0002	338	130	21	5	95	3	6	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0003	338	24	14	4	3	1	2	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/1	a0004	338	15	1	1	4	1	7	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0005	212	12	10	0	1	0	1	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0006	338	2	0	2	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0007	338	1	1	0	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0008	338	1	0	0	0	0	1	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0009	249	1	0	0	1	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0010	338	1	0	1	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0011	338	1	0	0	1	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0012	338	1	0	0	0	0	1	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0013	338	1	0	0	0	0	1	copy fasta	HLA-G	chr6	29822825	29836021