Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	3127
ensemblid	ENSG00000198502.6
hgncid	4953
symbol	HLA-DRB5
name	major histocompatibility complex, class II, DR beta 5
refseq_nuc	NM_002125.4
refseq_prot	NP_002116.2
ensembl_nuc	ENST00000374975.4
ensembl_prot	ENSP00000364114.3
mane_status	MANE Select
chr	chr6
start	32517353
end	32530287
strand	-
ver	v1.2
region	chr6:32517353-32530287
region5000	chr6:32512353-32535287
regionname0	HLA-DRB5_chr6_32517353_32530287
regionname5000	HLA-DRB5_chr6_32512353_32535287

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/0	266	12	0	0	6	0	5	4	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	MVCLK others(261): Show MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGT ERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDR RAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNG FYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY TCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLGAGLFIYF KNQKGHSGLHPTGLVS	chr6	32512353	32535287
a0002	0/0	266	7	0	0	4	0	3	4	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	MVCLK others(261): Show MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGT ERVRFLHRGIYNQEENVRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDR RAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNG FYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY TCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLGAGLFIYF KNQKGHSGLHPTGLVS	chr6	32512353	32535287

achapid	grch38/ chm13v2	alen	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aseq	cseq	chr	start	end
a0001c0001	1/0		798	12	0	0	6	0	5	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5		ATGGT others(793): Show ATGGTGTGTCTGAAGCTCCCTGGAGGTTCCTACATGGCAAAGCTGACAGT GACACTGATGGTGCTGAGCTCCCCACTGGCTTTGGCTGGGGACACCCGAC CACGTTTCTTGCAGCAGGATAAGTATGAGTGTCATTTCTTCAACGGGACG GAGCGGGTGCGGTTCCTGCACAGAGACATCTATAACCAAGAGGAGGACTT GCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTGACGGAGCTGGGGC GGCCTGACGCTGAGTACTGGAACAGCCAGAAGGACTTCCTGGAAGACAGG CGCGCCGCGGTGGACACCTACTGCAGACACAACTACGGGGTTGGTGAGAG CTTCACAGTGCAGCGGCGAGTTGAGCCTAAGGTGACTGTGTATCCTGCAA GGACCCAGACCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGAATGGT TTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAACAGCCAGGAAGA GAAGGCTGGGGTGGTGTCCACAGGCCTGATTCAGAATGGAGACTGGACCT TCCAGACCCTGGTGATGCTGGAAACAGTTCCTCGAAGTGGAGAGGTTTAC ACCTGCCAAGTGGAGCACCCAAGCGTGACGAGCCCTCTCACAGTGGAATG GAGAGCACAGTCTGAATCTGCACAGAGCAAGATGCTGAGTGGAGTCGGGG GCTTTGTGCTGGGCCTGCTCTTCCTTGGGGCCGGGCTATTCATCTACTTC AAGAATCAGAAAGGGCACTCTGGACTTCACCCAACAGGACTCGTGAGC	chr6	32512353	32535287
a0002c0002	0/0		798	7	0	0	4	0	3	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5		ATGGT others(793): Show ATGGTGTGTCTGAAGCTCCCTGGAGGTTCCTACATGGCAAAGCTGACAGT GACACTGATGGTGCTGAGCTCCCCACTGGCTTTGGCTGGGGACACCCGAC CACGTTTCTTGCAGCAGGATAAGTATGAGTGTCATTTCTTCAACGGGACG GAGCGGGTGCGGTTCCTGCACAGAGGCATCTATAACCAAGAGGAGAACGT GCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTGACGGAGCTGGGGC GGCCTGACGCTGAGTACTGGAACAGCCAGAAGGACTTCCTGGAAGACAGG CGCGCCGCGGTGGACACCTACTGCAGACACAACTACGGGGTTGGTGAGAG CTTCACAGTGCAGCGGCGAGTTGAGCCTAAGGTGACTGTGTATCCTGCAA GGACCCAGACCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGAATGGT TTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGAACAGCCAGGAAGA GAAGGCTGGGGTGGTGTCCACAGGCCTGATTCAGAATGGAGACTGGACCT TCCAGACCCTGGTGATGCTGGAAACAGTTCCTCGAAGTGGAGAGGTTTAC ACCTGCCAAGTGGAGCACCCAAGCGTGACGAGCCCTCTCACAGTGGAATG GAGAGCACAGTCTGAATCTGCACAGAGCAAGATGCTGAGTGGAGTCGGGG GCTTTGTGCTGGGCCTGCTCTTCCTTGGGGCCGGGCTATTCATCTACTTC AAGAATCAGAAAGGGCACTCTGGACTTCACCCAACAGGACTCGTGAGC	chr6	32512353	32535287

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/0	1250	12	0	0	6	0	5	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	ATAGT others(1245): Show ATAGTTCTCCCTGAGTGAGACTTGCCTGCTCCTCTGGCCCCTGGTCCTGT CCTGTTCTCCAGCATGGTGTGTCTGAAGCTCCCTGGAGGTTCCTACATGG CAAAGCTGACAGTGACACTGATGGTGCTGAGCTCCCCACTGGCTTTGGCT GGGGACACCCGACCACGTTTCTTGCAGCAGGATAAGTATGAGTGTCATTT CTTCAACGGGACGGAGCGGGTGCGGTTCCTGCACAGAGACATCTATAACC AAGAGGAGGACTTGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTG ACGGAGCTGGGGCGGCCTGACGCTGAGTACTGGAACAGCCAGAAGGACTT CCTGGAAGACAGGCGCGCCGCGGTGGACACCTACTGCAGACACAACTACG GGGTTGGTGAGAGCTTCACAGTGCAGCGGCGAGTTGAGCCTAAGGTGACT GTGTATCCTGCAAGGACCCAGACCCTGCAGCACCACAACCTCCTGGTCTG CTCTGTGAATGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGA ACAGCCAGGAAGAGAAGGCTGGGGTGGTGTCCACAGGCCTGATTCAGAAT GGAGACTGGACCTTCCAGACCCTGGTGATGCTGGAAACAGTTCCTCGAAG TGGAGAGGTTTACACCTGCCAAGTGGAGCACCCAAGCGTGACGAGCCCTC TCACAGTGGAATGGAGAGCACAGTCTGAATCTGCACAGAGCAAGATGCTG AGTGGAGTCGGGGGCTTTGTGCTGGGCCTGCTCTTCCTTGGGGCCGGGCT ATTCATCTACTTCAAGAATCAGAAAGGGCACTCTGGACTTCACCCAACAG GACTCGTGAGCTGAAGTGCAGATGACCACATTCAAGGGGGAACCTTCTGC CCCAGCTTTGCATGATGAAAAGCTTTCCTGCTTGGCTCTTATTCTTCCAC AAGAGAGGACTTTCTCAGGCCCTGGTTGCTACCGGTTCAGCAACTCTGCA GAAAATGTCCATCCTTGTGGCTTCCTCAGCTCCTGCCCTTGGCCTGAAGT CCCAGCATTGATGGCAGTGCCTCATCTTCAACTTTAGTGCTCCCCTTTAC CTAACCCTACGGCCTCCCATGCATCTGTACTCCCCCTGTGTGCCACAAAT GCACTACGTTATTAAATTTTTCTGAAGCCCAGAGTTAAAAATCATCTGTC CACCTGGCTCCAAAGACAAAAAATAAAAAGAAAAGAAAAAGGGAAGATTA	chr6	32512353	32535287
a0002c0002t0001	0/0	1250	7	0	0	4	0	3	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	ATAGT others(1245): Show ATAGTTCTCCCTGAGTGAGACTTGCCTGCTCCTCTGGCCCCTGGTCCTGT CCTGTTCTCCAGCATGGTGTGTCTGAAGCTCCCTGGAGGTTCCTACATGG CAAAGCTGACAGTGACACTGATGGTGCTGAGCTCCCCACTGGCTTTGGCT GGGGACACCCGACCACGTTTCTTGCAGCAGGATAAGTATGAGTGTCATTT CTTCAACGGGACGGAGCGGGTGCGGTTCCTGCACAGAGGCATCTATAACC AAGAGGAGAACGTGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTG ACGGAGCTGGGGCGGCCTGACGCTGAGTACTGGAACAGCCAGAAGGACTT CCTGGAAGACAGGCGCGCCGCGGTGGACACCTACTGCAGACACAACTACG GGGTTGGTGAGAGCTTCACAGTGCAGCGGCGAGTTGAGCCTAAGGTGACT GTGTATCCTGCAAGGACCCAGACCCTGCAGCACCACAACCTCCTGGTCTG CTCTGTGAATGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCGGA ACAGCCAGGAAGAGAAGGCTGGGGTGGTGTCCACAGGCCTGATTCAGAAT GGAGACTGGACCTTCCAGACCCTGGTGATGCTGGAAACAGTTCCTCGAAG TGGAGAGGTTTACACCTGCCAAGTGGAGCACCCAAGCGTGACGAGCCCTC TCACAGTGGAATGGAGAGCACAGTCTGAATCTGCACAGAGCAAGATGCTG AGTGGAGTCGGGGGCTTTGTGCTGGGCCTGCTCTTCCTTGGGGCCGGGCT ATTCATCTACTTCAAGAATCAGAAAGGGCACTCTGGACTTCACCCAACAG GACTCGTGAGCTGAAGTGCAGATGACCACATTCAAGGGGGAACCTTCTGC CCCAGCTTTGCATGATGAAAAGCTTTCCTGCTTGGCTCTTATTCTTCCAC AAGAGAGGACTTTCTCAGGCCCTGGTTGCTACCGGTTCAGCAACTCTGCA GAAAATGTCCATCCTTGTGGCTTCCTCAGCTCCTGCCCTTGGCCTGAAGT CCCAGCATTGATGGCAGTGCCTCATCTTCAACTTTAGTGCTCCCCTTTAC CTAACCCTACGGCCTCCCATGCATCTGTACTCCCCCTGTGTGCCACAAAT GCACTACGTTATTAAATTTTTCTGAAGCCCAGAGTTAAAAATCATCTGTC CACCTGGCTCCAAAGACAAAAAATAAAAAGAAAAGAAAAAGGGAAGATTA	chr6	32512353	32535287

actghapid	grch38/ chm13v2	total	EAS	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0002	0/0	3	1	2	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
a0001c0001t0001g0003	0/0	2	2	0	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
a0001c0001t0001g0004	0/0	2	0	2	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
a0001c0001t0001g0005	1/0	2	0	1	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
a0001c0001t0001g0006	0/0	2	2	0	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
a0001c0001t0001g0009	0/0	1	1	0	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
a0002c0002t0001g0001	0/0	5	3	2	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
a0002c0002t0001g0007	0/0	1	1	0	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
a0002c0002t0001g0008	0/0	1	0	1	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG02155	hp1	a0001	c0001	t0001	g0006	EAS	CDX	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
HG02155	hp2	a0001	c0001	t0001	g0002	EAS	CDX	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
HG02683	hp1	a0001	c0001	t0001	g0004	SAS	PJL	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
HG02683	hp2	a0002	c0002	t0001	g0001	SAS	PJL	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
HG03490	hp1	a0001	c0001	t0001	g0004	SAS	PJL	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
HG03490	hp2	a0002	c0002	t0001	g0001	SAS	PJL	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
HG03831	hp1	a0002	c0002	t0001	g0008	SAS	BEB	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
HG03831	hp2	a0001	c0001	t0001	g0002	SAS	BEB	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
HG04228	hp1	a0001	c0001	t0001	g0005	SAS	STU	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
HG04228	hp2	a0001	c0001	t0001	g0002	SAS	STU	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
NA18954	hp1	a0002	c0002	t0001	g0001	EAS	JPT	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
NA18954	hp2	a0001	c0001	t0001	g0006	EAS	JPT	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
NA18959	hp1	a0002	c0002	t0001	g0007	EAS	JPT	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
NA18959	hp2	a0001	c0001	t0001	g0003	EAS	JPT	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
NA18982	hp1	a0002	c0002	t0001	g0001	EAS	JPT	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
NA18982	hp2	a0001	c0001	t0001	g0003	EAS	JPT	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
NA18998	hp1	a0001	c0001	t0001	g0009	EAS	JPT	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
NA18998	hp2	a0002	c0002	t0001	g0001	EAS	JPT	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287
homoSapiens	grch38p0	a0001	c0001	t0001	g0005	REF	REF	HLA-DRB5_chr6_32512353_32535287	HLA-DRB5	chr6	32512353	32535287

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr6:32522076	A A	C C	1	a0002 a0002	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	missense_variant	MODERATE	c.199T>G c.199T>G	p.Leu67Val p.Leu67Val	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/6	262/1250	199/801	67/266	chr6	32522076
chr6:32522079	C C	T T	1	a0002 a0002	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	missense_variant	MODERATE	c.196G>A c.196G>A	p.Asp66Asn p.Asp66Asn	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/6	259/1250	196/801	66/266	chr6	32522079
chr6:32522099	T T	C C	1	a0002 a0002	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	missense_variant	MODERATE	c.176A>G c.176A>G	p.Asp59Gly p.Asp59Gly	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/6	239/1250	176/801	59/266	chr6	32522099

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr6:32518679	A A	G G	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.653-13T>C c.653-13T>C	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	3/5	chr6	32518679
chr6:32520101	A A	G G	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.371-450T>C c.371-450T>C	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32520101
chr6:32520235	T T	C C	8	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(5): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0009 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	17	HG02155.hp1 HG02155.hp2 HG02683.hp1 others(14): Show HG02155.hp1 HG02155.hp2 HG02683.hp1 HG02683.hp2 HG03490.hp1 HG03490.hp2 HG03831.hp1 HG03831.hp2 HG04228.hp2 NA18954.hp1 NA18954.hp2 NA18959.hp1 NA18959.hp2 NA18982.hp1 NA18982.hp2 NA18998.hp1 NA18998.hp2	intron_variant	MODIFIER	c.371-584A>G c.371-584A>G	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32520235
chr6:32520355	A A	C C	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.371-704T>G c.371-704T>G	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32520355
chr6:32521801	C C	CCT CCT	1	a0001c0001t0001g0004 a0001c0001t0001g0004	2	HG02683.hp1 HG03490.hp1 HG02683.hp1 HG03490.hp1	intron_variant	MODIFIER	c.370+102_370+103dup others(2): Show c.370+102_370+103dupAG	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32521801
chr6:32521801	C C	CCTCT CCTCT	1	a0001c0001t0001g0002 a0001c0001t0001g0002	3	HG02155.hp2 HG03831.hp2 HG04228.hp2 HG02155.hp2 HG03831.hp2 HG04228.hp2	intron_variant	MODIFIER	c.370+100_370+103dup others(4): Show c.370+100_370+103dupAGAG	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32521801
chr6:32521801	C C	CCTCTCTC others(25): Show CCTCTCTCTCTCTCTCTGTCTCTCTCTTCCTCT	1	a0002c0002t0001g0008 a0002c0002t0001g0008	1	HG03831.hp1 HG03831.hp1	intron_variant	MODIFIER	c.370+103_370+104ins others(32): Show c.370+103_370+104insAGAGGAAGAGAGAGACAGAGAGAGAGAGAG AG	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32521801
chr6:32521811	T T	TCTCTCTG others(29): Show TCTCTCTGTCTCTCTCTTCCTCTCTCTCTCTCTCTCA	2	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0001 a0002c0002t0001g0007	6	HG02683.hp2 HG03490.hp2 NA18954.hp1 others(3): Show HG02683.hp2 HG03490.hp2 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.370+93_370+94insTG others(34): Show c.370+93_370+94insTGAGAGAGAGAGAGAGAGGAAGAGAGAGACAG AGAG	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32521811
chr6:32521813	A A	T T	5	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(2): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0002c0002t0001g0008	10	HG02155.hp1 HG02155.hp2 HG02683.hp1 others(7): Show HG02155.hp1 HG02155.hp2 HG02683.hp1 HG03490.hp1 HG03831.hp1 HG03831.hp2 HG04228.hp2 NA18954.hp2 NA18959.hp2 NA18982.hp2	intron_variant	MODIFIER	c.370+92T>A c.370+92T>A	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32521813
chr6:32521815	A A	T T	4	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0009	7	HG02155.hp1 HG02683.hp1 HG03490.hp1 others(4): Show HG02155.hp1 HG02683.hp1 HG03490.hp1 NA18954.hp2 NA18959.hp2 NA18982.hp2 NA18998.hp1	intron_variant	MODIFIER	c.370+90T>A c.370+90T>A	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32521815
chr6:32521817	A A	T T	3	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0009	5	HG02155.hp1 NA18954.hp2 NA18959.hp2 others(2): Show HG02155.hp1 NA18954.hp2 NA18959.hp2 NA18982.hp2 NA18998.hp1	intron_variant	MODIFIER	c.370+88T>A c.370+88T>A	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	2/5	chr6	32521817
chr6:32522888	C C	G G	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.101-714G>C c.101-714G>C	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32522888
chr6:32523791	T T	C C	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.101-1617A>G c.101-1617A>G	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32523791
chr6:32525913	C C	T T	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.101-3739G>A c.101-3739G>A	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32525913
chr6:32526517	CT CT	C C	2	a0002c0002t0001g0001 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0008	6	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(3): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.100+3607delA c.100+3607delA	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32526517
chr6:32526582	T T	C C	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.100+3543A>G c.100+3543A>G	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32526582
chr6:32526630	G G	C C	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.100+3495C>G c.100+3495C>G	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32526630
chr6:32527436	C C	T T	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.100+2689G>A c.100+2689G>A	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32527436
chr6:32527497	C C	CAA CAA	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.100+2626_100+2627d others(4): Show c.100+2626_100+2627dupTT	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32527497
chr6:32527930	G G	A A	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.100+2195C>T c.100+2195C>T	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32527930
chr6:32529106	C C	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	2	HG02155.hp1 NA18954.hp2 HG02155.hp1 NA18954.hp2	intron_variant	MODIFIER	c.100+1019G>T c.100+1019G>T	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32529106
chr6:32529676	C C	T T	3	a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0001 a0002c0002t0001g0007 a0002c0002t0001g0008	7	HG02683.hp2 HG03490.hp2 HG03831.hp1 others(4): Show HG02683.hp2 HG03490.hp2 HG03831.hp1 NA18954.hp1 NA18959.hp1 NA18982.hp1 NA18998.hp2	intron_variant	MODIFIER	c.100+449G>A c.100+449G>A	HLA-DRB5	ENSG00000198502.6	transcript	ENST00000374975.4	protein_coding	1/5	chr6	32529676

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JoGo Haplotype Explorer

HLA-DRB5_chr6_32512353_32535287 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 2)

Coding Level Haplotype Info (Total: 2)

Transcript Level Haplotype Info (Total: 2)

Genebody Level Haplotype Info (Total: 9)

Haplotype Details by Sample (Haploid Level) (Total: 19)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

Transcript Level Haplotype Variants (Exon) (Total: 0)

Genebody Level Haplotype Variants (Intron) (Total: 22)

Annotation (Repeats)

Annotation (SNP Array)