JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HNRNPA1L2_chr13_52637431_52648773	0/0	a0010	320	1	1	0	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	a0011	320	1	0	0	1	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L3_chr16_51640757_51652079	1/1	a0001	320	381	75	71	179	12	42	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0002	320	18	16	2	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0003	320	5	0	0	5	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0004	320	5	0	0	5	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0005	320	4	0	0	4	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0006	320	2	2	0	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0007	320	2	0	0	2	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0008	320	2	0	0	0	0	2	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0009	320	1	1	0	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0010	320	1	0	0	1	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	a0011	320	1	0	1	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1_chr12_54275726_54292087	1/1	a0001	372	376	94	72	154	14	40	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA2B1_chr7_26184927_26205746	1/1	a0001	341	432	98	68	204	14	46	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA3_chr2_177207794_177228959	0/0	a0001	378	332	98	60	134	6	34	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPAB_chr5_178199533_178216163	1/1	a0001	332	460	99	82	211	18	48	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	a0002	332	1	0	0	1	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	a0003	332	1	1	0	0	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPCL1_chr1_12842377_12853720	1/1	a0001	293	264	50	51	124	13	24	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	a0002	293	46	29	9	5	1	2	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	a0003	293	19	0	0	16	1	2	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	a0004	293	17	0	7	6	1	3	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	a0005	153	2	1	1	0	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	a0006	293	2	0	0	2	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	a0007	60	1	0	0	1	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	a0008	293	1	0	0	1	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	a0009	293	1	0	0	0	0	1	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	a0010	86	1	0	0	1	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL2_chr1_13110488_13121854	0/0	a0001	293	167	29	33	83	4	18	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/1	a0002	293	114	26	20	55	6	6	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0003	293	66	1	8	52	1	4	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0004	293	39	22	4	1	1	11	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0005	293	21	3	2	11	0	5	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0006	293	4	0	3	0	1	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0007	292	3	3	0	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0008	293	3	2	1	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0009	293	3	0	2	0	1	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0010	293	2	0	1	0	0	1	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0011	293	1	0	0	1	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0012	186	1	0	0	1	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	a0013	293	1	0	0	0	0	1	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL3_chr1_13055769_13067878	0/0	a0001	293	113	2	31	68	8	4	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL3_chr1_13055769_13067878	0/0	a0002	293	3	0	1	0	2	0	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL4_chr1_13158914_13170631	0/0	a0001	293	144	21	39	66	7	11	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/1	a0002	293	59	6	10	34	1	7	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	a0003	268	5	0	2	3	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	a0004	293	4	0	0	4	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	a0005	293	1	0	0	1	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	a0006	293	1	1	0	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631