JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HOXD1_chr2_176183668_176195907	0/0	a0003	328	27	26	1	0	0	0	copy fasta	HOXD1	chr2	176183668	176195907
HOXD3_chr2_176152307_176178098	1/1	a0001	432	329	77	54	146	16	34	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	a0002	432	1	1	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	a0003	432	1	1	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	a0004	432	1	1	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD4_chr2_176146550_176158226	1/1	a0001	255	277	46	40	149	13	27	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	a0002	255	71	32	21	5	1	12	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	a0003	255	1	1	0	0	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	a0004	255	1	0	0	0	0	1	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	a0005	255	1	0	1	0	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	a0006	255	1	1	0	0	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD8_chr2_176124705_176137695	1/1	a0001	290	372	73	71	171	14	41	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	a0002	292	9	3	2	0	0	4	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	a0003	290	6	6	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	a0004	284	4	4	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	a0005	290	3	0	0	3	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	a0006	290	2	0	0	2	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	a0007	171	1	0	0	1	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	a0008	290	1	0	0	0	0	1	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	a0009	290	1	0	1	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	a0010	290	1	0	0	1	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD9_chr2_176117719_176129937	1/0	a0001	352	250	73	43	105	4	24	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/1	a0002	353	144	7	30	84	7	15	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	a0003	352	3	2	1	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	a0004	352	2	0	0	0	0	2	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	a0005	353	1	0	0	1	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	a0006	352	1	0	0	0	1	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	a0007	353	1	1	0	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	a0008	352	1	1	0	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	a0009	352	1	0	0	0	0	1	copy fasta	HOXD9	chr2	176117719	176129937
HP1BP3_chr1_20735266_20792307	1/1	a0001	553	375	93	67	154	16	43	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	a0002	553	2	0	1	0	0	1	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	a0003	553	1	1	0	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HPCAL1_chr2_10297904_10432604	1/1	a0001	193	314	86	62	116	12	36	copy fasta	HPCAL1	chr2	10297904	10432604
HPCAL4_chr1_39673648_39696433	1/1	a0001	191	419	87	72	194	16	48	copy fasta	HPCAL4	chr1	39673648	39696433
HPCAL4_chr1_39673648_39696433	0/0	a0002	191	1	1	0	0	0	0	copy fasta	HPCAL4	chr1	39673648	39696433
HPCA_chr1_32881491_32899646	1/1	a0001	193	388	96	68	166	12	44	copy fasta	HPCA	chr1	32881491	32899646
HPDL_chr1_45321895_45333710	1/1	a0001	371	410	98	74	178	18	40	copy fasta	HPDL	chr1	45321895	45333710
HPD_chr12_121834527_121863859	0/1	a0001	393	316	71	62	134	14	34	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	1/0	a0002	393	68	7	18	37	2	3	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	a0003	393	11	11	0	0	0	0	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	a0004	393	5	3	0	1	0	1	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	a0005	393	3	0	2	0	0	1	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	a0006	393	2	0	0	0	0	2	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	a0007	393	1	0	0	0	0	1	copy fasta	HPD	chr12	121834527	121863859
HPF1_chr4_169724470_169762944	0/0	a0000	0	1	0	1	0	0	0	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	a0001	346	225	64	40	89	6	26	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	1/0	a0002	346	90	30	11	29	4	15	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	a0003	346	2	2	0	0	0	0	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/1	a0004	346	1	0	0	0	0	0	copy fasta	HPF1	chr4	169724470	169762944