JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HSD17B8_chr6_33199655_33211831	0/1	a0001	261	388	96	75	159	16	41	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	a0002	261	7	0	0	7	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	a0003	261	1	0	0	0	0	1	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	a0004	261	1	0	0	1	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	a0005	261	1	0	0	1	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	a0006	261	1	1	0	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	a0007	261	1	1	0	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	a0008	261	1	1	0	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	a0009	261	1	1	0	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	a0010	261	1	0	1	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD3B1_chr1_119502210_119520054	0/0	a0001	373	292	49	50	155	8	30	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	1/1	a0002	373	57	4	16	18	8	9	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	a0003	373	51	38	3	5	0	5	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	a0004	373	6	3	1	2	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	a0005	373	3	3	0	0	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	a0006	373	1	1	0	0	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B2_chr1_119410150_119428034	1/1	a0001	372	433	85	66	218	18	44	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	a0002	372	4	4	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	a0003	372	2	2	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	a0004	372	1	0	0	1	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	a0005	372	1	0	0	1	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	a0006	372	1	1	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B7_chr16_30980207_30994147	0/1	a0001	369	145	19	37	66	11	11	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	1/0	a0002	369	129	42	23	27	5	31	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	a0003	369	33	32	1	0	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	a0004	369	3	0	0	0	0	3	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	a0005	369	2	1	1	0	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	a0006	369	1	0	0	1	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	a0007	369	1	0	0	0	0	1	copy fasta	HSD3B7	chr16	30980207	30994147
HSDL1_chr16_84117141_84150177	1/1	a0001	330	331	70	61	154	11	33	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	a0002	330	110	25	18	54	5	8	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	a0003	330	2	0	0	2	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	a0004	330	1	0	1	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	a0005	166	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	a0006	330	1	1	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	a0007	330	1	0	0	0	0	1	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	a0008	330	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL2_chr9_112375108_112477405	1/1	a0001	418	365	86	63	166	12	36	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	a0002	418	1	0	1	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSF1_chr8_144286604_144319720	1/0	a0001	529	312	88	52	120	14	37	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/1	a0002	529	12	0	2	4	0	5	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	a0003	529	2	0	2	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	a0004	529	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	a0005	529	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	a0006	529	1	0	0	1	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	a0007	529	1	0	0	1	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF2BP_chr21_43524186_43664488	1/1	a0001	334	2	0	0	0	0	0	copy fasta	HSF2BP	chr21	43524186	43664488
HSF2_chr6_122394652_122438119	1/1	a0001	536	386	86	70	184	14	30	copy fasta	HSF2	chr6	122394652	122438119
HSF4_chr16_67159745_67174941	1/1	a0001	492	264	92	54	66	10	40	copy fasta	HSF4	chr16	67159745	67174941
HSF4_chr16_67159745_67174941	0/0	a0002	321	1	0	0	1	0	0	copy fasta	HSF4	chr16	67159745	67174941