JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFI16_chr1_159004907_159060151	0/0	a0004	785	23	22	0	1	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0005	785	18	10	2	5	0	1	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0006	729	6	2	2	0	2	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0007	785	5	2	1	1	0	1	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0008	785	2	2	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0009	785	2	0	0	2	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0010	785	1	0	0	1	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0011	785	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0012	785	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0013	785	1	0	0	0	0	1	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0014	785	1	0	0	0	1	0	copy fasta	IFI16	chr1	159004907	159060151
IFI27L1_chr14_94076310_94107709	0/1	a0001	104	446	97	82	200	18	48	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	a0002	104	1	1	0	0	0	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L2_chr14_94122781_94134604	0/1	a0001	130	429	94	70	202	18	44	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27L2_chr14_94122781_94134604	0/0	a0002	130	2	0	0	2	0	0	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27L2_chr14_94122781_94134604	0/0	a0003	130	1	0	0	1	0	0	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27L2_chr14_94122781_94134604	0/0	a0004	130	1	0	0	1	0	0	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27_chr14_94105736_94121690	0/0	a0001	122	280	46	42	146	12	34	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/1	a0002	119	150	16	35	80	6	12	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	a0003	122	35	33	2	0	0	0	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	a0004	122	1	0	1	0	0	0	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	a0005	122	1	1	0	0	0	0	copy fasta	IFI27	chr14	94105736	94121690
IFI30_chr19_18168813_18183117	1/0	a0001	250	288	71	58	110	11	37	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/1	a0002	250	58	22	11	16	3	5	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	a0003	250	2	0	2	0	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	a0004	250	1	1	0	0	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	a0005	250	1	0	1	0	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI35_chr17_43001784_43019456	0/1	a0001	286	304	62	57	128	12	44	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	1/0	a0002	286	14	12	1	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	a0003	286	11	11	0	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	a0004	286	4	0	0	4	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	a0005	253	2	0	0	2	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	a0006	286	1	0	1	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	a0007	286	1	0	1	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	a0008	286	1	1	0	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	a0009	286	1	0	0	0	0	1	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	a0010	286	1	0	0	0	0	1	copy fasta	IFI35	chr17	43001784	43019456
IFI44L_chr1_78615448_78651145	1/1	a0001	452	184	57	49	56	7	13	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0002	452	101	11	21	52	5	12	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0003	452	88	2	2	80	0	4	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0004	452	21	0	2	18	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0005	452	16	16	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0006	452	8	3	2	0	0	3	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0007	452	6	6	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0008	448	2	2	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0009	452	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0010	452	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0011	452	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	a0012	452	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44_chr1_78644831_78669073	1/1	a0001	444	367	79	58	173	16	39	copy fasta	IFI44	chr1	78644831	78669073