JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IPO13_chr1_43941950_43973022	1/1	a0001	963	362	84	54	184	6	32	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	a0002	963	2	0	0	2	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	a0003	963	1	0	0	1	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	a0004	963	1	1	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	a0005	963	1	1	0	0	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO13_chr1_43941950_43973022	0/0	a0006	963	1	0	0	1	0	0	copy fasta	IPO13	chr1	43941950	43973022
IPO4_chr14_24175219_24193816	1/1	a0001	1081	230	39	47	107	10	25	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0002	1081	161	17	21	100	5	18	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0003	1081	14	10	0	3	0	1	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0004	1081	9	5	0	3	1	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0005	1081	5	4	1	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0006	1081	4	4	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0007	1081	4	0	0	0	0	4	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0008	1081	2	2	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0009	1081	2	2	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0010	1081	2	2	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0011	1081	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0012	1081	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0013	1081	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0014	1081	1	0	0	0	0	1	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0015	1081	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0016	1081	1	1	0	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0017	1081	1	0	0	1	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0018	1081	1	0	0	0	0	1	copy fasta	IPO4	chr14	24175219	24193816
IPO4_chr14_24175219_24193816	0/0	a0019	1081	1	0	1	0	0	0	copy fasta	IPO4	chr14	24175219	24193816
IPO5_chr13_97948675_98029296	1/1	a0001	1097	375	92	67	166	6	42	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	a0002	1097	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	a0003	1097	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	a0004	1097	1	0	0	1	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	a0005	1097	1	0	1	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO5_chr13_97948675_98029296	0/0	a0006	1097	1	1	0	0	0	0	copy fasta	IPO5	chr13	97948675	98029296
IPO7_chr11_9379652_9453127	1/1	a0001	1038	313	78	60	136	8	29	copy fasta	IPO7	chr11	9379652	9453127
IPO7_chr11_9379652_9453127	0/0	a0002	1038	1	0	0	0	0	1	copy fasta	IPO7	chr11	9379652	9453127
IPO8_chr12_30623988_30700869	1/1	a0001	1037	370	82	65	170	12	39	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	a0002	1037	2	0	1	0	0	1	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	a0003	1037	1	0	0	0	0	1	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	a0004	1037	1	0	0	0	0	1	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	a0005	1037	1	1	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	a0006	1037	1	1	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO9_chr1_201824157_201889291	1/1	a0001	1041	387	86	78	163	18	40	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	a0002	1041	3	0	0	3	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	a0003	1041	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	a0004	1033	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	a0005	1041	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	a0006	1041	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	a0007	1041	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	a0008	1041	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPPK_chr9_92608183_92675131	1/1	a0001	491	301	81	63	109	15	31	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	a0002	491	23	1	3	13	1	5	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	a0003	491	15	0	0	15	0	0	copy fasta	IPPK	chr9	92608183	92675131