JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITGB4_chr17_75716459_75762818	0/0	a0007	1822	2	1	1	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0008	1822	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0009	1822	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0010	1822	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0011	1822	1	0	1	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0012	1822	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0013	1822	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0014	1822	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0015	1822	1	0	1	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0016	1822	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0017	1822	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0018	1822	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0019	1822	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0020	1822	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0021	1822	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0022	1822	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0023	1822	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0024	1822	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB5_chr3_124756948_124892365	1/0	a0001	799	257	77	46	104	12	17	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	a0002	799	42	1	1	37	0	3	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	a0003	796	26	0	8	11	0	7	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	a0004	799	20	3	5	8	0	4	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/1	a0005	796	2	0	0	0	1	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	a0006	799	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	a0007	796	1	0	0	0	0	1	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	a0008	796	1	0	0	1	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	a0009	799	1	0	0	1	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	a0010	799	1	0	0	0	1	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB6_chr2_160094671_160205272	1/1	a0001	788	347	81	59	155	14	36	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0002	788	2	0	0	2	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0003	788	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0004	788	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0005	373	1	0	1	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0006	788	1	0	0	0	0	1	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0007	788	1	0	0	0	0	1	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0008	788	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0009	788	1	0	1	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0010	788	1	0	1	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	a0011	788	1	1	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB7_chr12_53186323_53212251	1/1	a0001	798	380	92	58	177	9	42	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0002	798	7	2	2	0	0	3	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0003	798	3	0	1	0	1	1	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0004	798	3	0	3	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0005	798	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0006	798	1	0	0	1	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0007	798	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0008	798	1	0	1	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0009	798	1	0	1	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0010	798	1	0	1	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	a0011	798	1	0	1	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251