Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AMT_chr3_49411778_49427473	0/0	a0003	403	2	0	0	2	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	a0004	403	1	0	0	1	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	a0005	403	1	1	0	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	a0006	403	1	0	0	1	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	a0007	403	1	1	0	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	a0008	403	1	0	1	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	a0009	403	1	0	0	1	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	a0010	403	1	1	0	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMY1A_chr1_103650760_103669554	0/0	a0000	0	1	0	0	0	0	1	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0001	511	217	40	31	105	5	36	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0002	511	2	0	0	2	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0003	511	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0004	511	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0005	511	1	0	0	0	1	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0006	511	1	1	0	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0007	511	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0008	511	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0009	351	1	0	1	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0010	511	1	1	0	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0011	511	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	a0012	511	1	0	0	0	0	1	copy fasta	AMY1A	chr1	103650760	103669554
AMY1B_chr1_103682415_103701210	0/0	a0001	511	151	35	31	68	2	15	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	a0002	511	2	0	0	0	0	2	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	a0003	511	1	0	1	0	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	a0004	354	1	0	0	1	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	a0005	511	1	0	0	1	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	a0006	511	1	0	0	0	0	1	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	a0007	511	1	0	1	0	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	a0008	511	1	0	1	0	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	a0009	511	1	1	0	0	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1C_chr1_103744898_103763692	0/0	a0001	511	330	79	65	138	9	39	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	a0002	511	3	0	1	0	0	2	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	a0003	511	3	0	0	0	0	3	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	a0004	511	1	0	0	1	0	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	a0005	511	1	0	0	0	1	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	a0006	354	1	0	0	1	0	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	a0007	511	1	1	0	0	0	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY2A_chr1_103612427_103630780	1/1	a0001	511	240	52	51	108	9	18	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0002	511	49	4	8	26	1	10	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0003	511	10	9	1	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0004	511	2	2	0	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0005	511	2	0	0	2	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0006	511	1	0	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0007	511	1	0	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0008	511	1	1	0	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0009	511	1	1	0	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0010	521	1	0	1	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0011	511	1	0	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0012	511	1	0	1	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	a0013	511	1	1	0	0	0	0	copy fasta	AMY2A	chr1	103612427	103630780