JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KDM4E_chr11_95020258_95032596	0/0	a0012	506	1	1	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0013	506	1	0	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0014	461	1	1	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0015	506	1	0	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0016	506	1	0	0	1	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0017	506	1	0	0	0	0	1	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0018	506	1	0	0	0	0	1	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0019	506	1	0	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4F_chr11_95044422_95056338	1/1	a0001	638	380	70	72	176	14	46	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0002	220	14	0	1	13	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0003	638	13	11	2	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0004	638	7	7	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0005	638	5	0	0	5	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0006	638	3	3	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0007	638	2	2	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0008	638	2	0	0	2	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0009	638	2	0	0	0	2	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0010	638	1	0	0	0	0	1	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0011	638	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0012	638	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0013	638	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0014	609	1	0	1	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0015	638	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0016	638	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0017	445	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0018	638	1	0	0	0	0	1	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0019	638	1	0	0	1	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0020	638	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM4F_chr11_95044422_95056338	0/0	a0021	638	1	1	0	0	0	0	copy fasta	KDM4F	chr11	95044422	95056338
KDM5A_chr12_275057_394320	1/1	a0001	1690	180	52	33	69	4	20	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0002	1690	152	25	29	85	4	9	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0003	1690	3	2	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0004	1690	3	0	0	3	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0005	1690	3	3	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0006	1690	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0007	1690	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0008	1690	1	0	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0009	1690	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0010	1690	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0011	1690	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0012	1287	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0013	1690	1	0	0	0	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	a0014	1690	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5B_chr1_202719495_202813421	1/1	a0001	1544	371	76	62	180	10	41	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	a0002	1544	4	0	4	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	a0003	1544	2	2	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	a0004	1544	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	a0005	1544	1	1	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	a0006	1544	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	a0007	1544	1	0	0	0	0	1	copy fasta	KDM5B	chr1	202719495	202813421