JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIDINS220_chr2_8723858_8842613	0/0	a0004	1771	2	0	0	2	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	a0005	1771	2	0	0	0	0	2	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	a0006	1771	1	1	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	a0007	1771	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	a0008	1771	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	a0009	1771	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	a0010	1771	1	1	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	a0011	1771	1	0	1	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIF11_chr10_92588130_92660395	1/1	a0001	1056	338	82	67	133	14	40	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	a0002	1056	6	5	1	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	a0003	1056	3	0	0	3	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	a0004	1056	1	1	0	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	a0005	1056	1	0	0	1	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	a0006	943	1	0	0	1	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	a0007	1056	1	1	0	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	a0008	1056	1	1	0	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF12_chr9_114086638_114104292	1/1	a0001	651	387	74	70	186	16	39	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0002	651	24	9	9	0	2	4	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0003	651	4	4	0	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0004	651	3	3	0	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0005	651	3	3	0	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0006	651	1	0	1	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0007	651	1	0	0	1	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0008	651	1	1	0	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0009	651	1	0	0	1	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0010	651	1	0	0	1	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0011	651	1	0	0	0	0	1	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0012	651	1	0	0	1	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0013	651	1	0	0	0	0	1	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	a0014	651	1	0	0	0	0	1	copy fasta	KIF12	chr9	114086638	114104292
KIF13A_chr6_17758693_17992635	1/1	a0001	1805	255	73	38	108	10	24	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0002	1805	5	5	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0003	1805	3	3	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0004	1805	3	0	1	0	2	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0005	1805	3	0	0	3	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0006	1805	2	0	0	2	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0007	1805	2	2	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0008	1805	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0009	1805	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0010	1805	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0011	1805	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0012	1805	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0013	1805	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0014	1805	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0015	1805	1	0	1	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	a0016	1805	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13B_chr8_29062278_29268070	1/1	a0001	1826	264	72	46	106	6	32	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0002	1826	4	0	4	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0003	1826	3	3	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0004	1826	2	0	0	0	0	2	copy fasta	KIF13B	chr8	29062278	29268070