JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLHDC7B_chr22_50540899_50556023	0/0	a0035	1211	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0036	1211	1	0	0	0	1	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0037	1211	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0038	1211	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0039	588	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0040	1211	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0041	1243	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0042	1219	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0043	1219	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0044	1219	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0045	1219	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0046	1219	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0047	1235	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0048	1211	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0049	1211	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0050	1211	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0051	1211	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0052	1235	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC8A_chr1_205331061_205361922	1/1	a0001	350	404	98	70	170	18	46	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8B_chr3_49166598_49181486	1/1	a0001	354	250	84	48	68	14	34	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC9_chr1_161093361_161105346	1/0	a0001	349	254	71	47	97	10	28	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/1	a0002	349	125	8	29	75	4	8	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	a0003	349	18	0	3	11	0	4	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	a0004	349	1	0	0	1	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	a0005	349	1	0	0	1	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	a0006	349	1	0	0	1	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	a0007	349	1	0	1	0	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	a0008	349	1	1	0	0	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHL10_chr17_41832825_41853384	1/1	a0001	608	391	95	77	163	14	40	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	a0002	608	1	0	1	0	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	a0003	608	1	0	0	1	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL10_chr17_41832825_41853384	0/0	a0004	608	1	1	0	0	0	0	copy fasta	KLHL10	chr17	41832825	41853384
KLHL11_chr17_41843518_41870423	1/1	a0001	708	362	85	77	141	12	45	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	a0002	708	1	1	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	a0003	708	1	0	0	0	0	1	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	a0004	708	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	a0005	708	1	0	1	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL12_chr1_202886120_202932234	1/1	a0001	568	357	78	62	171	8	36	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	a0002	302	1	0	0	1	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL13_chrX_117892813_118121810	1/1	a0001	639	201	65	24	81	7	22	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	a0002	639	5	2	3	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	a0003	639	1	1	0	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL14_chr18_32667673_32778023	1/1	a0001	628	201	92	52	44	2	9	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	a0002	628	1	0	0	0	0	1	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	a0003	628	1	0	1	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	a0004	628	1	0	1	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL15_chrX_23978720_24032186	1/1	a0001	604	283	63	58	123	9	28	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	a0002	236	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	a0003	604	1	1	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	a0004	66	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186