JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLHL5_chr4_39057232_39131233	0/0	a0002	709	1	0	0	0	0	1	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	a0003	709	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL6_chr3_183482551_183560706	1/1	a0001	621	282	73	57	112	10	28	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	a0002	621	5	5	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	a0003	621	5	5	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	a0004	619	3	0	3	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	a0005	621	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	a0006	621	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL7_chr7_23100785_23182914	1/1	a0001	586	326	86	58	138	10	32	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	a0002	586	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	a0003	586	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL8_chr4_87155103_87225618	1/1	a0001	620	362	88	62	154	18	38	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	a0002	620	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	a0003	620	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL9_chr9_21324665_21340404	1/1	a0001	617	427	91	78	198	18	40	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	a0002	617	2	0	0	2	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	a0003	617	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	a0004	617	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	a0005	617	1	1	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLK10_chr19_51007739_51024709	0/0	a0000	0	2	0	1	0	1	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/1	a0001	276	233	78	45	84	7	18	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	1/0	a0002	276	139	1	26	80	6	25	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	a0003	276	71	17	8	43	0	3	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	a0004	276	2	0	0	2	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	a0005	276	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	a0006	276	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	a0007	267	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK11_chr19_51017236_51031616	1/1	a0001	250	397	91	74	170	18	42	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	a0002	250	42	4	4	29	0	5	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	a0003	250	6	0	5	0	0	1	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	a0004	250	5	0	0	5	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	a0005	250	3	3	0	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	a0006	250	1	0	0	1	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	a0007	250	1	0	0	1	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	a0008	250	1	0	1	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK12_chr19_51024094_51040002	1/1	a0001	248	437	87	77	204	18	49	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	a0002	248	6	4	1	0	0	1	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	a0003	248	5	5	0	0	0	0	copy fasta	KLK12	chr19	51024094	51040002
KLK13_chr19_51050626_51070092	1/1	a0001	277	450	93	82	208	18	47	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	a0002	277	4	4	0	0	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	a0003	277	2	0	0	0	0	2	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	a0004	277	1	0	0	1	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	a0005	277	1	1	0	0	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	a0006	277	1	0	0	1	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	a0007	277	1	0	0	0	0	1	copy fasta	KLK13	chr19	51050626	51070092
KLK14_chr19_51072897_51087887	1/1	a0001	251	286	23	48	185	9	19	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0002	251	104	46	23	13	6	16	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0003	251	21	16	1	0	0	4	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0004	251	11	0	3	0	3	5	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0005	251	5	5	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887